MirGeneDB 2.1

MirGeneDB ID

Dya-Mir-2-P2b1

Family name MIR-2 (all species)
Seed AUCACAG
Species Fruit fly (Drosophila yakuba)
MiRBase ID dya-mir-13b-1
Paralogues Dya-Mir-2-P1-v1  Dya-Mir-2-P1-v2  Dya-Mir-2-P2a  Dya-Mir-2-P2b2  Dya-Mir-2-P3a  Dya-Mir-2-P3b  Dya-Mir-2-P4a-v1  Dya-Mir-2-P4a-v2  Dya-Mir-2-P4b-v1  Dya-Mir-2-P4b-v2  Dya-Mir-2-P5  Dya-Mir-2-P6a  Dya-Mir-2-P6b  Dya-Mir-2-P6c  Dya-Mir-2-P7  Dya-Mir-2-P8  Dya-Mir-2-P9-v1  Dya-Mir-2-P9-v2 
Orthologues Aae-Mir-2-P2  Bge-Mir-2-P2  Dan-Mir-2-P2b1  Dma-Mir-2-o2  Dma-Mir-2-P2  Dme-Mir-2-P2b1  Dmo-Mir-2-P2b1  Dpu-Mir-2-o2  Dpu-Mir-2-P2  Dsi-Mir-2-P2b1 
Node of Origin (locus) Drosophila
Node of Origin (family) Protostomia
Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)
3R: 15188742-15188801 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P2b1)
Mir-2-P1-v1 3R: 15188380-15188446 [+] UCSC Ensembl
Mir-2-P1-v2 3R: 15188380-15188446 [+] UCSC Ensembl
Mir-2-P2a 3R: 15188599-15188661 [+] UCSC Ensembl
Mir-2-P2b1 3R: 15188742-15188801 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCGAUUGACCCACGUCUUUCUUAUACCAUGUCGUUAAAAUGUUUGUGAACUUAUGUAUUCGCAAUCAUAUCACAGCCAUUUUGACGAGUUUGGGUAAAGAAAUCUCAACAAUUUCGGAAA
Get precursor sequence
Structure
        10          20        30          40        50        60
UCGAUUGACCCACGUCU--     A    AUG--|          U      ACU    UAUU 
                   UUCUU UACC     UCGUUAAAAUG UUGUGA   UAUG    C
                   AAGAA AUGG     AGCAGUUUUAC GACACU   AUAC    G
AAAGGCUUUAACAACUCUA     -    GUUUG^          C      ---    UAAC 
.       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Wh
Star sequence

Dya-Mir-2-P2b1_5p*

mirBase accessionNone
Sequence
0- UCGUUAAAAUGUUUGUGAACUUAUG -25
Get sequence
Mature sequence

Dya-Mir-2-P2b1_3p

mirBase accessionMIMAT0009056
Sequence
37- UAUCACAGCCAUUUUGACGAGUU -60
Get sequence