Mir-2-P2

MirGeneDB ID

Dpu-Mir-2-P2

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Common water flea (Daphnia pulex)

MiRBase ID

Paralogues

Dpu-Mir-2-o1 Dpu-Mir-2-o2 Dpu-Mir-2-P1 Dpu-Mir-2-P3 Dpu-Mir-2-P4

Orthologues

Aae-Mir-2-P2 Bge-Mir-2-P2 Csc-Mir-2-P2o Dan-Mir-2-P2a Dan-Mir-2-P2b1 Dan-Mir-2-P2b2 Dma-Mir-2-o2 Dma-Mir-2-P2 Dme-Mir-2-P2a Dme-Mir-2-P2b1 Dme-Mir-2-P2b2 Dmo-Mir-2-P2a Dmo-Mir-2-P2b1 Dmo-Mir-2-P2b2 Dsi-Mir-2-P2a Dsi-Mir-2-P2b1 Dsi-Mir-2-P2b2 Dya-Mir-2-P2a Dya-Mir-2-P2b1 Dya-Mir-2-P2b2 Hme-Mir-2-P2c Hme-Mir-2-P2d Lpo-Mir-2-P2g Lpo-Mir-2-P2h Lpo-Mir-2-P2j Lpo-Mir-2-P2l Lpo-Mir-2-P2m Tca-Mir-2-P2e Tca-Mir-2-P2f

Node of Origin (locus)

Arthropoda

Node of Origin (family)

Protostomia

Genome context
(Daphnia_pulex.V1.0)

DAPPUscaffold_80: 240731-240792 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P2)

Mir-71 DAPPUscaffold_80: 240430-240495 [+] Ensembl
Mir-2-P3 DAPPUscaffold_80: 240864-240934 [+] Ensembl
Mir-2-P4 DAPPUscaffold_80: 241044-241106 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AAAAAAGACAUUUGACGCAUUUGCGCCGCUCGUCGGAAAGGCUGUGGUGUGUUGCCAUUUUACAAUUUCAUAUCACAGCCAUUCUAGAUGCGCGGAGCUGCCGGAAGACGCAGAGAAAUUGA

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Structure

        10        20          30         40        50          
AAAAAAGACAUUUGACGCAUUU--  G    U    -|   A            UUGCCAUU 
                        GC CCGC CGUC GGAA GGCUGUGGUGUG        \
                        CG GGCG GUAG UCUU CCGACACUAUAC        U
AGUUAAAGAGACGCAGAAGGCCGU  A    C    A^   A            UUUAACAU 
120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

Tissue expression

To

Star sequence

Dpu-Mir-2-P2_5p*

mirBase accession

None

Sequence

0- CGUCGGAAAGGCUGUGGUGUG -21

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Mature sequence

Dpu-Mir-2-P2_3p

mirBase accession

None

Sequence

40- UAUCACAGCCAUUCUAGAUGCG -62

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