MirGeneDB 3.0

MirGeneDB ID

Dpu-Mir-71

Family name MIR-71 (all species)
Species Common water flea (Daphnia pulex)
MiRBase ID dpu-mir-71
Paralogues
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Ava-Mir-71-P20  Ava-Mir-71-P21  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Csc-Mir-71-P14  Csc-Mir-71-P15  Cte-Mir-71  Dgr-Mir-71  Dlo-Mir-71  Dma-Mir-71  Efe-Mir-71-P1  Efe-Mir-71-P2  Efe-Mir-71-P3  Egr-Mir-71  Esc-Mir-71  Gsa-Mir-71-o7  Gsa-Mir-71-o8  Hme-Mir-71  Hru-Mir-71  Isc-Mir-71  Lan-Mir-71-P4  Lan-Mir-71-P5  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Lpo-Mir-71-P7  Lpo-Mir-71-P8  Lpo-Mir-71-P9  Lpo-Mir-71-P10  Lpo-Mir-71-P11  Lpo-Mir-71-P12  Lpo-Mir-71-P13  Mgi-Mir-71  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pau-Mir-71  Pca-Mir-71  Pcr-Mir-71-v1  Pdu-Mir-71  Pfl-Mir-71  Ple-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Sma-Mir-71-o5  Sma-Mir-71-o6  Sme-Mir-71-o1a  Sme-Mir-71-o1b  Sme-Mir-71-o2  Sme-Mir-71-o3  Sme-Mir-71-o4  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  Tur-Mir-71-P6a  Tur-Mir-71-P6b  War-Mir-71 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(Daphnia_pulex.V1.0)
DAPPUscaffold_80: 240430-240495 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-71)
Mir-71 DAPPUscaffold_80: 240430-240495 [+] Ensembl
Mir-2-P1 DAPPUscaffold_80: 240557-240644 [+] Ensembl
Mir-2-P2 DAPPUscaffold_80: 240731-240792 [+] Ensembl
Mir-2-P3 DAPPUscaffold_80: 240864-240934 [+] Ensembl
Mir-2-P4 DAPPUscaffold_80: 241044-241106 [+] Ensembl
Seed GAAAGAC
Precursor
(pre-Mir +30nt flank)
GUAAAAUGUGCGUUGUGAAAGGCAUCGGCCUGAAAGACAUGGGUAGUGAGAUGUUGGCCUGGUAGUUCCUCACCUCUCACUACUUUGUCGUUCAUGUCGUGCACUUUUCCAAAUCUUCGCCGCCGC
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Structure
        10          20         30        40        50        60   
GUAAAAUGUGCGUUGUG--    -|  U    C    A    U           U UUGGCCUGG 
                   AAAG GCA CGGC UGAA GACA GGGUAGUGAGA G         \
                   UUUC CGU GCUG ACUU CUGU UUCAUCACUCU C         U
CGCCGCCGCUUCUAAACCU    A^  -    U    G    -           C ACUCCUUGA 
    120       110       100         90         80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
- +
To
Mature sequence

Dpu-Mir-71_5p

mirBase accessionMIMAT0012667
Sequence
0- UGAAAGACAUGGGUAGUGAGAUGU -24
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Co-mature sequence

Dpu-Mir-71_3p

mirBase accessionNone
Sequence
45- CUCACUACUUUGUCGUUCAUG -66
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