MirGeneDB 2.1
MirGeneDB ID

Dpu-Mir-71

Family name MIR-71 (all species)
Seed GAAAGAC
Species Common water flea (Daphnia pulex)
MiRBase ID dpu-mir-71
Paralogues
Orthologues Aae-Mir-71  Asu-Mir-71  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Cgi-Mir-71  Csc-Mir-71-P14  Csc-Mir-71-P15  Cte-Mir-71  Dma-Mir-71  Efe-Mir-71-P1  Efe-Mir-71-P2  Efe-Mir-71-P3  Esc-Mir-71  Hme-Mir-71  Isc-Mir-71  Lan-Mir-71-P4  Lan-Mir-71-P5  Lgi-Mir-71  Lpo-Mir-71-P7  Lpo-Mir-71-P8  Lpo-Mir-71-P9  Lpo-Mir-71-P10  Lpo-Mir-71-P11  Lpo-Mir-71-P12  Lpo-Mir-71-P13  Npo-Mir-71  Obi-Mir-71  Ovu-Mir-71  Pfl-Mir-71  Pmi-Mir-71  Sko-Mir-71  Sme-Mir-71-P16a  Sme-Mir-71-P16b  Sme-Mir-71-P17  Sme-Mir-71-P18  Sme-Mir-71-P19  Spu-Mir-71  Tca-Mir-71 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_80: 240430-240495 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-71)		 Mir-71 DAPPUscaffold_80: 240430-240495 [+] Ensembl
Mir-2-P3 DAPPUscaffold_80: 240864-240934 [+] Ensembl
Mir-2-P4 DAPPUscaffold_80: 241044-241106 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUAAAAUGUGCGUUGUGAAAGGCAUCGGCCUGAAAGACAUGGGUAGUGAGAUGUUGGCCUGGUAGUUCCUCACCUCUCACUACUUUGUCGUUCAUGUCGUGCACUUUUCCAAAUCUUCGCCGCCGC
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Structure
        10          20         30        40        50        60   
GUAAAAUGUGCGUUGUG--    -|  U    C    A    U           U UUGGCCUGG 
                   AAAG GCA CGGC UGAA GACA GGGUAGUGAGA G         \
                   UUUC CGU GCUG ACUU CUGU UUCAUCACUCU C         U
CGCCGCCGCUUCUAAACCU    A^  -    U    G    -           C ACUCCUUGA 
    120       110       100         90         80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
-   +
To
Mature sequence

Dpu-Mir-71_5p
mirBase accessionMIMAT0012667
Sequence 
0- UGAAAGACAUGGGUAGUGAGAUGU -24
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Co-mature sequence

Dpu-Mir-71_3p
mirBase accessionNone
Sequence 
45- CUCACUACUUUGUCGUUCAUG -66
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