Mir-71-o8

MirGeneDB ID

Gsa-Mir-71-o8

Family name

MIR-71 (all species)

Species

Russian doll killer (Gyrodactylus salaris)

MiRBase ID

gsa-mir-71b

Paralogues

Gsa-Mir-71-o7

Orthologues

Aae-Mir-71 Aga-Mir-71 Agr-Mir-71 Asu-Mir-71 Bfl-Mir-71 Bge-Mir-71 Bla-Mir-71 Cbr-Mir-71 Cel-Mir-71 Cte-Mir-71 Dgr-Mir-71 Dlo-Mir-71 Dma-Mir-71 Dpu-Mir-71 Egr-Mir-71 Esc-Mir-71 Hme-Mir-71 Hru-Mir-71 Isc-Mir-71 Lgi-Mir-71 Lhy-Mir-71 Llo-Mir-71 Lpo-Mir-71-P8 Mgi-Mir-71 Mom-Mir-71 Npo-Mir-71 Obi-Mir-71 Ofu-Mir-71 Ovu-Mir-71 Pau-Mir-71 Pca-Mir-71 Pdu-Mir-71 Pfl-Mir-71 Ple-Mir-71 Pmi-Mir-71 Pve-Mir-71 Rph-Mir-71 Sko-Mir-71 Snu-Mir-71 Spu-Mir-71 Tca-Mir-71 War-Mir-71

Node of Origin (locus)

G. salaris

Node of Origin (family)

Nephrozoa

Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)

scf7180006953439: 69489-69543 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-71-o8)

Mir-2-o163 scf7180006953439: 69381-69446 [-] UCSC Ensembl
Mir-71-o8 scf7180006953439: 69489-69543 [-] UCSC Ensembl

Seed

GAAAGAC

Precursor
(pre-Mir +30nt flank)

GUAAGUUCUCUGUUAUUCUGAUACGCUUGAUGAAAGACAUGGGUAAUGAGUAUCAUCUAAGUUCUCAUUAUUCCUGUCCUUCAUAAUUCGUUUCAUUCUGCGUCAGACUGUUCAA

Get precursor sequence

Structure

        10          20        30        40        50       
GUAAGUUCUCUGUUAUUC--|  U   CUUG     A    U          UAUCAU 
                    UGA ACG    AUGAA GACA GGGUAAUGAG      \
                    ACU UGC    UACUU CUGU CUUAUUACUC      C
AACUUGUCAGACUGCGUCUU^  U   UUAA     C    C          UUGAAU 
   110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Gsa-Mir-71-o8_5p

mirBase accession

MIMAT0035250

Sequence

0- UGAAAGACAUGGGUAAUGAGUA -22

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Star sequence

Gsa-Mir-71-o8_3p*

mirBase accession

MIMAT0035251

Sequence

33- CUCAUUAUUCCUGUCCUUCAUA -55

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