| MirGeneDB ID | Npo-Mir-71 |
|---|---|
| Family name | MIR-71 (all species) |
| Species | Chambered Nautilus (Nautilus pompilius) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aae-Mir-71 Aga-Mir-71 Agr-Mir-71 Asu-Mir-71 Ava-Mir-71-P20 Ava-Mir-71-P21 Bfl-Mir-71 Bge-Mir-71 Bla-Mir-71 Cbr-Mir-71 Cel-Mir-71 Csc-Mir-71-P14 Csc-Mir-71-P15 Cte-Mir-71 Dgr-Mir-71 Dlo-Mir-71 Dma-Mir-71 Dpu-Mir-71 Efe-Mir-71-P1 Efe-Mir-71-P2 Efe-Mir-71-P3 Egr-Mir-71 Esc-Mir-71 Gsa-Mir-71-o7 Gsa-Mir-71-o8 Hme-Mir-71 Hru-Mir-71 Isc-Mir-71 Lan-Mir-71-P4 Lan-Mir-71-P5 Lgi-Mir-71 Lhy-Mir-71 Llo-Mir-71 Lpo-Mir-71-P7 Lpo-Mir-71-P8 Lpo-Mir-71-P9 Lpo-Mir-71-P10 Lpo-Mir-71-P11 Lpo-Mir-71-P12 Lpo-Mir-71-P13 Mgi-Mir-71 Mom-Mir-71 Obi-Mir-71 Ofu-Mir-71 Ovu-Mir-71 Pau-Mir-71 Pca-Mir-71 Pcr-Mir-71-v1 Pdu-Mir-71 Pfl-Mir-71 Ple-Mir-71 Pmi-Mir-71 Pve-Mir-71 Rph-Mir-71 Sko-Mir-71 Sma-Mir-71-o5 Sma-Mir-71-o6 Sme-Mir-71-o1a Sme-Mir-71-o1b Sme-Mir-71-o2 Sme-Mir-71-o3 Sme-Mir-71-o4 Snu-Mir-71 Spu-Mir-71 Tca-Mir-71 Tur-Mir-71-P6a Tur-Mir-71-P6b War-Mir-71 |
| Node of Origin (locus) | Nephrozoa |
| Node of Origin (family) | Nephrozoa |
| Genome context (GCA_018389105_NPO) |
JACATO010000013.1: 409153-409211 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-71) |
Mir-71
JACATO010000013.1: 409153-409211 [+]
Ensembl
Mir-2-o45 JACATO010000013.1: 409573-409634 [+] Ensembl Mir-2-P12 JACATO010000013.1: 409697-409758 [+] Ensembl Mir-2-o47 JACATO010000013.1: 409822-409878 [+] Ensembl Mir-2-o48a JACATO010000013.1: 410153-410212 [+] Ensembl Mir-2-o48b JACATO010000013.1: 410351-410409 [+] Ensembl Mir-2-o49 JACATO010000013.1: 410469-410530 [+] Ensembl |
| Seed | GAAAGAC |
| Precursor (pre-Mir +30nt flank) |
AGUUUCUGCUGUGGACUGAUGUGUGCUGCUUGAAAGACACGGGUAGUGAGAUGGUAAUGUCAACGCGUCUUACUACCCUGUCUUUUCCGCUGAACACUUCACAGCUGCUGUACCGACAUGet precursor sequence |
| Structure | 10 20 30 40 50 AGUUUCUGCUGUGGACU--| U GCU UU C GUAAU GA GUGU GC GAAAGACA GGGUAGUGAGAUG G CU CACA CG UUUUCUGU CCCAUCAUUCUGC U UACAGCCAUGUCGUCGACA^ U AGU CC - GCAAC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Npo-Mir-71_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGAAAGACACGGGUAGUGAGAUG -23
Get sequence
|
| Star sequence | Npo-Mir-71_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- UCUUACUACCCUGUCUUUUCCG -59
Get sequence
|
