MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-71

Family name MIR-71 (all species)
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Ava-Mir-71-P20  Ava-Mir-71-P21  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Csc-Mir-71-P14  Csc-Mir-71-P15  Cte-Mir-71  Dgr-Mir-71  Dlo-Mir-71  Dma-Mir-71  Dpu-Mir-71  Efe-Mir-71-P1  Efe-Mir-71-P2  Efe-Mir-71-P3  Egr-Mir-71  Esc-Mir-71  Gsa-Mir-71-o7  Gsa-Mir-71-o8  Hme-Mir-71  Hru-Mir-71  Isc-Mir-71  Lan-Mir-71-P4  Lan-Mir-71-P5  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Lpo-Mir-71-P7  Lpo-Mir-71-P8  Lpo-Mir-71-P9  Lpo-Mir-71-P10  Lpo-Mir-71-P11  Lpo-Mir-71-P12  Lpo-Mir-71-P13  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pau-Mir-71  Pca-Mir-71  Pcr-Mir-71-v1  Pdu-Mir-71  Pfl-Mir-71  Ple-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Sma-Mir-71-o5  Sma-Mir-71-o6  Sme-Mir-71-o1a  Sme-Mir-71-o1b  Sme-Mir-71-o2  Sme-Mir-71-o3  Sme-Mir-71-o4  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  Tur-Mir-71-P6a  Tur-Mir-71-P6b  War-Mir-71 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(CGI_GCA_000297895.1)		 scaffold602: 444840-444896 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-71)		 Mir-71 scaffold602: 444840-444896 [+] Ensembl
Mir-2-o56 scaffold602: 445001-445057 [+] Ensembl
Mir-2-P12 scaffold602: 445140-445196 [+] Ensembl
Mir-2-o57 scaffold602: 445414-445474 [+] Ensembl
Mir-2-o58b scaffold602: 445724-445782 [+] Ensembl
Mir-2-o59 scaffold602: 445843-445901 [+] Ensembl
Mir-2-o60 scaffold602: 446019-446076 [+] Ensembl
Mir-2-o61 scaffold602: 446534-446592 [+] Ensembl
Seed GAAAGAC
Precursor
(pre-Mir +30nt flank)		 
UUUUUCUGGGGUAAAGUGCUUGACUUGUUGUGAAAGACAUGGGUAGUGAGAUGUUUUAAGGGUCACCUUGCUACUCUGUCUUUUGCAUGAGGUCAGGAAAUUCCAUCAGAUGAUCAG
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Structure
        10          20        30        40        50        
UUUUUCUGGGGUAAAGUG--|       GU  UG       U      UG  A  UUUU 
                    CUUGACUU  UG  AAAGACA GGGUAG  AG UG    A
                    GGACUGGA  AC  UUUCUGU CUCAUC  UC AC    A
GACUAGUAGACUACCUUAAA^       GU  GU       -      GU  C  UGGG 
     110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Mature sequence

Mgi-Mir-71_5p
mirBase accessionNone
Sequence 
0- UGAAAGACAUGGGUAGUGAGAUG -23
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Star sequence

Mgi-Mir-71_3p*
mirBase accessionNone
Sequence 
35- CCUUGCUACUCUGUCUUUUGCA -57
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