MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-71-P1

Family name MIR-71 (all species)
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-71-P2  Efe-Mir-71-P3 
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Cte-Mir-71  Dgr-Mir-71  Dlo-Mir-71  Dma-Mir-71  Dpu-Mir-71  Egr-Mir-71  Esc-Mir-71  Hme-Mir-71  Hru-Mir-71  Isc-Mir-71  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Mgi-Mir-71  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pau-Mir-71  Pca-Mir-71  Pdu-Mir-71  Pfl-Mir-71  Ple-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Sme-Mir-71-o1a  Sme-Mir-71-o1b  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  War-Mir-71 
Node of Origin (locus) E. fetida
Node of Origin (family) Nephrozoa
Genome context
(Efe_combined)		 Efet.01.155957: 625-687 [+]
Clustered miRNAs
(< 50kb from Mir-71-P1)		 Mir-71-P1 Efet.01.155957: 625-687 [+]
Mir-2-P12g Efet.01.155957: 2068-2132 [+]
Mir-2-o21 Efet.01.155957: 5781-5841 [+]
Seed GAAAGAC
Precursor
(pre-Mir +30nt flank)		 
UAAGUUAAUGCAAUCUUUGGUGGGCCUUUUUGAAAGACAUGGGUAGUGAGAUGUUCUGUUACUGAAUACCAUCUUACUACCUUGUCCUUCCAGAAGUUCUGCUCAACUGUGUCUUAUGAGAAU
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Structure
        10          20        30        40        50        60 
UAAGUUAAUGCAAUCUU-  -|UG GC     U   A    U             UUCUGUU 
                  UG G  G  CUUUU GAA GACA GGGUAGUGAGAUG       A
                  AC C  C  GAAGA CUU CUGU UCCAUCAUUCUAC       C
UAAGAGUAUUCUGUGUCA  U^GU UU     C   C    -             CAUAAGU 
 120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
To
Mature sequence

Efe-Mir-71-P1_5p
mirBase accessionNone
Sequence 
0- UGAAAGACAUGGGUAGUGAGAUG -23
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Star sequence

Efe-Mir-71-P1_3p*
mirBase accessionNone
Sequence 
41- UCUUACUACCUUGUCCUUCCAG -63
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