MirGeneDB 3.0
MirGeneDB ID

Esc-Mir-71

Family name MIR-71 (all species)
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Ava-Mir-71-P20  Ava-Mir-71-P21  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Csc-Mir-71-P14  Csc-Mir-71-P15  Cte-Mir-71  Dgr-Mir-71  Dlo-Mir-71  Dma-Mir-71  Dpu-Mir-71  Efe-Mir-71-P1  Efe-Mir-71-P2  Efe-Mir-71-P3  Egr-Mir-71  Gsa-Mir-71-o7  Gsa-Mir-71-o8  Hme-Mir-71  Hru-Mir-71  Isc-Mir-71  Lan-Mir-71-P4  Lan-Mir-71-P5  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Lpo-Mir-71-P7  Lpo-Mir-71-P8  Lpo-Mir-71-P9  Lpo-Mir-71-P10  Lpo-Mir-71-P11  Lpo-Mir-71-P12  Lpo-Mir-71-P13  Mgi-Mir-71  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pau-Mir-71  Pca-Mir-71  Pcr-Mir-71-v1  Pdu-Mir-71  Pfl-Mir-71  Ple-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Sma-Mir-71-o5  Sma-Mir-71-o6  Sme-Mir-71-o1a  Sme-Mir-71-o1b  Sme-Mir-71-o2  Sme-Mir-71-o3  Sme-Mir-71-o4  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  Tur-Mir-71-P6a  Tur-Mir-71-P6b  War-Mir-71 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(esc-GCA_024364805.1_ASM2436480v1)		 CM044488.1: 27565864-27565922 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-71)		 Mir-2-o49 CM044488.1: 27562752-27562815 [-] Ensembl
Mir-2-o48-v1 CM044488.1: 27562855-27562918 [-] Ensembl
Mir-2-o48-v2 CM044488.1: 27562855-27562918 [-] Ensembl
Mir-2-o47d CM044488.1: 27563803-27563860 [-] Ensembl
Mir-2-o47c CM044488.1: 27564000-27564059 [-] Ensembl
Mir-2-o47b CM044488.1: 27564469-27564528 [-] Ensembl
Mir-2-o47a-v1 CM044488.1: 27564797-27564854 [-] Ensembl
Mir-2-o47a-v2 CM044488.1: 27564797-27564854 [-] Ensembl
Mir-2-P12 CM044488.1: 27565399-27565460 [-] Ensembl
Mir-2-o45-v1 CM044488.1: 27565591-27565650 [-] Ensembl
Mir-2-o45-v2 CM044488.1: 27565591-27565650 [-] Ensembl
Mir-71 CM044488.1: 27565864-27565922 [-] Ensembl
Seed GAAAGAC
Precursor
(pre-Mir +30nt flank)		 
CCUUUGAAAUUGACUGGAAUGUGUUCGGCUUGAAAGACACGGGUAGUGAGAUGCUGUACUGUAGACUUCUUACUACCCUGUCUUUCGAGUGGUUCAUUUUAUUUUCAUAACUUUGGUCC
Get precursor sequence
Structure
        10            20        30        40        50         
CCUUUGAAAUUGACUGG----|   UGU   G           C           UGCUGUA 
                     AAUG   UCG CUUGAAAGACA GGGUAGUGAGA       C
                     UUAC   GGU GAGCUUUCUGU CCCAUCAUUCU       U
CCUGGUUUCAAUACUUUUAUU^   UU-   -           -           UCAGAUG 
       110       100         90         80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Li
Mature sequence

Esc-Mir-71_5p
mirBase accessionNone
Sequence 
0- UGAAAGACACGGGUAGUGAGAUG -23
Get sequence
Star sequence

Esc-Mir-71_3p*
mirBase accessionNone
Sequence 
37- UCUUACUACCCUGUCUUUCGAG -59
Get sequence