MirGeneDB 2.1

MirGeneDB ID

Esc-Mir-71

Family name MIR-71 (all species)
Seed GAAAGAC
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues
Orthologues Aae-Mir-71  Asu-Mir-71  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Cgi-Mir-71  Csc-Mir-71-P14  Csc-Mir-71-P15  Cte-Mir-71  Dma-Mir-71  Dpu-Mir-71  Efe-Mir-71-P1  Efe-Mir-71-P2  Efe-Mir-71-P3  Hme-Mir-71  Isc-Mir-71  Lan-Mir-71-P4  Lan-Mir-71-P5  Lgi-Mir-71  Lpo-Mir-71-P7  Lpo-Mir-71-P8  Lpo-Mir-71-P9  Lpo-Mir-71-P10  Lpo-Mir-71-P11  Lpo-Mir-71-P12  Lpo-Mir-71-P13  Npo-Mir-71  Obi-Mir-71  Ovu-Mir-71  Pfl-Mir-71  Pmi-Mir-71  Sko-Mir-71  Sme-Mir-71-P16a  Sme-Mir-71-P16b  Sme-Mir-71-P17  Sme-Mir-71-P18  Sme-Mir-71-P19  Spu-Mir-71  Tca-Mir-71 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCA_004765925.1_miRNA_LOCI)
Esc-Mir-71_pre_SRIE01000454.1:381526-381784: 101-159 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CCUUUGAAAUUGACUGGAAUGUGUUCGGCUUGAAAGACACGGGUAGUGAGAUGCUGUACUGUAGACUUCUUACUACCCUGUCUUUCGAGUGGUUCAUUUUAUUUUCAUAACUUUGGUCC
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Structure
        10            20        30        40        50         
CCUUUGAAAUUGACUGG----|   UGU   G           C           UGCUGUA 
                     AAUG   UCG CUUGAAAGACA GGGUAGUGAGA       C
                     UUAC   GGU GAGCUUUCUGU CCCAUCAUUCU       U
CCUGGUUUCAAUACUUUUAUU^   UU-   -           -           UCAGAUG 
       110       100         90         80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ce Li
Mature sequence

Esc-Mir-71_5p

mirBase accessionNone
Sequence
0- UGAAAGACACGGGUAGUGAGAUG -23
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Star sequence

Esc-Mir-71_3p*

mirBase accessionNone
Sequence
37- UCUUACUACCCUGUCUUUCGAG -59
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