Mir-71-P15

MirGeneDB ID

Csc-Mir-71-P15

Family name

MIR-71 (all species)

Species

Arizona bark scorpion (Centruroides sculpturatus)

MiRBase ID

Paralogues

Csc-Mir-71-P14

Orthologues

Aae-Mir-71 Aga-Mir-71 Agr-Mir-71 Asu-Mir-71 Bfl-Mir-71 Bge-Mir-71 Bla-Mir-71 Cbr-Mir-71 Cel-Mir-71 Cte-Mir-71 Dgr-Mir-71 Dlo-Mir-71 Dma-Mir-71 Dpu-Mir-71 Egr-Mir-71 Esc-Mir-71 Hme-Mir-71 Hru-Mir-71 Isc-Mir-71 Lgi-Mir-71 Lhy-Mir-71 Llo-Mir-71 Mgi-Mir-71 Mom-Mir-71 Npo-Mir-71 Obi-Mir-71 Ofu-Mir-71 Ovu-Mir-71 Pau-Mir-71 Pca-Mir-71 Pdu-Mir-71 Pfl-Mir-71 Ple-Mir-71 Pmi-Mir-71 Pve-Mir-71 Rph-Mir-71 Sko-Mir-71 Snu-Mir-71 Spu-Mir-71 Tca-Mir-71 War-Mir-71

Node of Origin (locus)

C. sculpturatus

Node of Origin (family)

Nephrozoa

Genome context
(GCF_000671375.1_CSC)

NW_019384652.1: 448162-448221 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-71-P15)

Mir-2-P4o NW_019384652.1: 439498-439557 [-] Ensembl
Mir-2-P3o NW_019384652.1: 446579-446637 [-] Ensembl
Mir-2-P2o NW_019384652.1: 447782-447839 [-] Ensembl
Mir-2-P1o NW_019384652.1: 447944-448006 [-] Ensembl
Mir-71-P15 NW_019384652.1: 448162-448221 [-] Ensembl

Seed

CUCACUA

Precursor
(pre-Mir +30nt flank)

CUUGGAAUGAUAUAACUGGUAUUAGUUCUGUGAAAGACAUGGGUAGUGAGAUGUGAUUUUUAAAAUCAUCUCACUACCUUGUCUUUGACGGAAAUAAUACAUUUUUGCAUCUUAAAUUUG

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Structure

        10          20        30        40        50          
CUUGGAAUGAUAUAACUG--|     G      G       U             UGAUUU 
                    GUAUUA UUCUGU AAAGACA GGGUAGUGAGAUG      \
                    CAUAAU AAGGCA UUUCUGU UCCAUCACUCUAC      U
GUUUAAAUUCUACGUUUUUA^     A      G       -             UAAAAU 
.       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Fe	Fe	Fe	Fe	Ma	Ma	Ma

Star sequence

Csc-Mir-71-P15_5p*

mirBase accession

None

Sequence

0- UGAAAGACAUGGGUAGUGAGAUG -23

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Mature sequence

Csc-Mir-71-P15_3p

mirBase accession

None

Sequence

38- UCUCACUACCUUGUCUUUGACG -60

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