MirGeneDB 3.0
MirGeneDB ID

Egr-Mir-71

Family name MIR-71 (all species)
Species Hydatid worm (Echinococcus granulosus)
MiRBase ID egr-mir-71
Paralogues
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Ava-Mir-71-P20  Ava-Mir-71-P21  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Csc-Mir-71-P14  Csc-Mir-71-P15  Cte-Mir-71  Dgr-Mir-71  Dlo-Mir-71  Dma-Mir-71  Dpu-Mir-71  Efe-Mir-71-P1  Efe-Mir-71-P2  Efe-Mir-71-P3  Esc-Mir-71  Gsa-Mir-71-o7  Gsa-Mir-71-o8  Hme-Mir-71  Hru-Mir-71  Isc-Mir-71  Lan-Mir-71-P4  Lan-Mir-71-P5  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Lpo-Mir-71-P7  Lpo-Mir-71-P8  Lpo-Mir-71-P9  Lpo-Mir-71-P10  Lpo-Mir-71-P11  Lpo-Mir-71-P12  Lpo-Mir-71-P13  Mgi-Mir-71  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pau-Mir-71  Pca-Mir-71  Pcr-Mir-71-v1  Pdu-Mir-71  Pfl-Mir-71  Ple-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Sma-Mir-71-o5  Sma-Mir-71-o6  Sme-Mir-71-o1a  Sme-Mir-71-o1b  Sme-Mir-71-o2  Sme-Mir-71-o3  Sme-Mir-71-o4  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  Tur-Mir-71-P6a  Tur-Mir-71-P6b  War-Mir-71 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus)		 APAU02000027.1: 925561-925620 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-71)		 Mir-71 APAU02000027.1: 925561-925620 [+] UCSC Ensembl
Mir-2-o136 APAU02000027.1: 925661-925716 [+] UCSC Ensembl
Mir-2-o137 APAU02000027.1: 925765-925820 [+] UCSC Ensembl
Seed GAAAGAC
Precursor
(pre-Mir +30nt flank)		 
UUCAUGUUCGCGCGUUUGGCAGUCAUCUCGUGAAAGACGAUGGUAGUGAGAUACAGAGGAAUCGAGCAUCUUGCUACUCCGUCUUUUCCUAAGAUGCUGCUUUGACCAUCCCGAUUACGG
Get precursor sequence
Structure
        10          20        30         40        50          
UUCAUGUUCGCGCGUUU--|    U     CGU-        AU     UG    ACAGAGG 
                   GGCAG CAUCU    GAAAGACG  GGUAG  AGAU       \
                   UCGUC GUAGA    UUUUCUGC  UCAUC  UCUA       A
GGCAUUAGCCCUACCAGUU^    -     AUCC        C-     GU    CGAGCUA 
.       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Eg Eg Ev Ev Ad Fe Fe Hy Hy Hy Li Li Li Mi Mi Mi Po Po Po Po Po Po Po Pr Pr Pr Sm
Mature sequence

Egr-Mir-71_5p
mirBase accessionMIMAT0020237
Sequence 
0- UGAAAGACGAUGGUAGUGAGAUA -23
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Star sequence

Egr-Mir-71_3p*
mirBase accessionMIMAT0037425
Sequence 
38- UCUUGCUACUCCGUCUUUUCCU -60
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