Mir-71-P14

MirGeneDB ID

Csc-Mir-71-P14

Family name

MIR-71 (all species)

Species

Arizona bark scorpion (Centruroides sculpturatus)

MiRBase ID

Paralogues

Csc-Mir-71-P15

Orthologues

Aae-Mir-71 Aga-Mir-71 Agr-Mir-71 Asu-Mir-71 Bfl-Mir-71 Bge-Mir-71 Bla-Mir-71 Cbr-Mir-71 Cel-Mir-71 Cte-Mir-71 Dgr-Mir-71 Dlo-Mir-71 Dma-Mir-71 Dpu-Mir-71 Egr-Mir-71 Esc-Mir-71 Hme-Mir-71 Hru-Mir-71 Isc-Mir-71 Lgi-Mir-71 Lhy-Mir-71 Llo-Mir-71 Mgi-Mir-71 Mom-Mir-71 Npo-Mir-71 Obi-Mir-71 Ofu-Mir-71 Ovu-Mir-71 Pau-Mir-71 Pca-Mir-71 Pdu-Mir-71 Pfl-Mir-71 Ple-Mir-71 Pmi-Mir-71 Pve-Mir-71 Rph-Mir-71 Sko-Mir-71 Snu-Mir-71 Spu-Mir-71 Tca-Mir-71 War-Mir-71

Node of Origin (locus)

C. sculpturatus

Node of Origin (family)

Nephrozoa

Genome context
(GCF_000671375.1_CSC)

NW_019384303.1: 1024444-1024501 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-71-P14)

Mir-71-P14 NW_019384303.1: 1024444-1024501 [+] Ensembl
Mir-2-P1n NW_019384303.1: 1024581-1024642 [+] Ensembl
Mir-2-P2n NW_019384303.1: 1024715-1024775 [+] Ensembl
Mir-2-P3n NW_019384303.1: 1024845-1024903 [+] Ensembl
Mir-2-P4n NW_019384303.1: 1025167-1025228 [+] Ensembl

Seed

CUCACUA

Precursor
(pre-Mir +30nt flank)

CUUUUUAACAGAAAUAAGUAAUCUUUACCGUGAAAGACAUGGGUAGUGAGAUGCUACUAGGAUCCAUCUCACUACCUUGUCUUUGACGGAAAGGAUGUCUUUACACGUCUUUACAUAU

Get precursor sequence

Structure

        10        20          30        40        50         
CUUUUUAACAGAAAUAAGUA--|     A    G       U             CUACU 
                      AUCUUU CCGU AAAGACA GGGUAGUGAGAUG     \
                      UAGGAA GGCA UUUCUGU UCCAUCACUCUAC     A
UAUACAUUUCUGCACAUUUCUG^     A    G       -             CUAGG 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	Fe	Fe	Ma	Ma	Ma

Star sequence

Csc-Mir-71-P14_5p*

mirBase accession

None

Sequence

0- UGAAAGACAUGGGUAGUGAGAUG -23

Get sequence

Mature sequence

Csc-Mir-71-P14_3p

mirBase accession

None

Sequence

36- UCUCACUACCUUGUCUUUGACG -58

Get sequence