Mir-2-P3n

MirGeneDB ID

Csc-Mir-2-P3n

Family name

MIR-2 (all species)

Species

Arizona bark scorpion (Centruroides sculpturatus)

MiRBase ID

Paralogues

Csc-Mir-2-P1n Csc-Mir-2-P1o Csc-Mir-2-P2n Csc-Mir-2-P2o Csc-Mir-2-P3o Csc-Mir-2-P4n Csc-Mir-2-P4o

Orthologues

Aae-Mir-2-P3 Aga-Mir-2-P3 Bge-Mir-2-P3-v1 Cbr-Mir-2-o3 Cel-Mir-2-o3 Dlo-Mir-2-P3-v1 Dma-Mir-2-P3 Dpu-Mir-2-P3 Gsp-Mir-2 Hme-Mir-2-P3-v1 Isc-Mir-2-P3 Ple-Mir-2 Tca-Mir-2-P3-v1

Node of Origin (locus)

C. sculpturatus

Node of Origin (family)

Protostomia

Genome context
(GCF_000671375.1_CSC)

NW_019384303.1: 1024845-1024903 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P3n)

Mir-71-P14 NW_019384303.1: 1024444-1024501 [+] Ensembl
Mir-2-P1n NW_019384303.1: 1024581-1024642 [+] Ensembl
Mir-2-P2n NW_019384303.1: 1024715-1024775 [+] Ensembl
Mir-2-P3n NW_019384303.1: 1024845-1024903 [+] Ensembl
Mir-2-P4n NW_019384303.1: 1025167-1025228 [+] Ensembl

Seed

AUCACAG

Precursor
(pre-Mir +30nt flank)

GUCUGACAGGAUUGUUUACUAGCCGUUCCGCUCACAAAGUGGCUGUUGUAUGUUGUUUUCUUCCAUAUCACAGCCAGCUUUGAUGAGUGAGAUGGGUAGCACAGCUGCGAAUCCAGGAC

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Structure

        10          20        30          40        50        
GUCUGACAGGAUUGUUUA--   G    UC      -     -|      U     UUGUU 
                    CUA CCGU  CGCUCA CAAAG UGGCUGU GUAUG     \
                    GAU GGUA  GUGAGU GUUUC ACCGACA UAUAC     U
CAGGACCUAAGCGUCGACAC   G    GA      A     G^      C     CUUCU 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	Fe	Fe	Ma	Ma	Ma

Star sequence

Csc-Mir-2-P3n_5p*

mirBase accession

None

Sequence

0- CUCACAAAGUGGCUGUUGUAUG -22

Get sequence

Mature sequence

Csc-Mir-2-P3n_3p

mirBase accession

None

Sequence

35- UAUCACAGCCAGCUUUGAUGAGUG -59

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