MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-2-P3

Family name MIR-2 (all species)
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-2-1
Paralogues Tca-Mir-2-P1-v1  Tca-Mir-2-P2a  Tca-Mir-2-P2b  Tca-Mir-2-P4-v1  Tca-Mir-2-P5c  Tca-Mir-2-P5d  Tca-Mir-2-P5e  Tca-Mir-2-P7  Tca-Mir-2-P8 
Orthologues Aae-Mir-2-P3  Aga-Mir-2-P3  Bge-Mir-2-P3-v1  Cbr-Mir-2-o3  Cel-Mir-2-o3  Csc-Mir-2-P3n  Csc-Mir-2-P3o  Dan-Mir-2-P3a-v1  Dan-Mir-2-P3b  Dlo-Mir-2-P3-v1  Dma-Mir-2-P3  Dme-Mir-2-P3a  Dme-Mir-2-P3b  Dmo-Mir-2-P3b  Dpu-Mir-2-P3  Dsi-Mir-2-P3a  Dsi-Mir-2-P3b  Dya-Mir-2-P3a  Dya-Mir-2-P3b  Gpa-Mir-2-P3a  Gpa-Mir-2-P3b  Gsp-Mir-2  Hme-Mir-2-P3-v1  Isc-Mir-2-P3  Lpo-Mir-2-P3g  Lpo-Mir-2-P3h  Lpo-Mir-2-P3i  Lpo-Mir-2-P3k  Lpo-Mir-2-P3l  Lpo-Mir-2-P3m  Ple-Mir-2 
Node of Origin (locus) Arthropoda
Node of Origin (family) Protostomia
Genome context
(Tcas5.2)		 LG3: 561200-561258 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P3-v1)		 Mir-3842 LG3: 559294-559352 [+] Ensembl
Mir-71 LG3: 560714-560776 [+] Ensembl
Mir-2-P1-v1 LG3: 560832-560890 [+] Ensembl
Mir-2-P1-v2 LG3: 560833-560889 [+] Ensembl
Mir-2-P2a LG3: 560954-561011 [+] Ensembl
Mir-2-P2b LG3: 561066-561124 [+] Ensembl
Mir-2-P3-v2 LG3: 561198-561260 [+] Ensembl
Mir-2-P3-v1 LG3: 561200-561258 [+] Ensembl
Mir-2-P4-v2 LG3: 561348-561412 [+] Ensembl
Mir-2-P4-v1 LG3: 561350-561410 [+] Ensembl
Variant

Tca-Mir-2-P3-v1
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
AUUUUUGUUCGAUUUUUAUGUGCUGUGUCGCUCAUCAACUGGAUGUGAAAUGGAUUUGUAGCUCAUAUCACAGCCAGCUUUGAUGAGCGCUACAACAUCUAAUAGACACCAUUUUCACA
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Structure
        10          20        30          40        50        
AUUUUUGUUCGAUUUUUAU--   C    U          --|   A     A   GAUUU 
                     GUG UGUG CGCUCAUCAA  CUGG UGUGA AUG     \
                     UAC ACAU GCGAGUAGUU  GACC ACACU UAC     G
ACACUUUUACCACAGAUAAUC   A    C          UC^   G     A   UCGAU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-2-P3-v1_5p*
mirBase accessionMIMAT0019094
Sequence 
0- CUCAUCAACUGGAUGUGAAAUG -22
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Mature sequence

Tca-Mir-2-P3-v1_3p
mirBase accessionMIMAT0008353
Sequence 
35- UAUCACAGCCAGCUUUGAUGAGCG -59
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Variant

Tca-Mir-2-P3-v2
Seed CACAGCC
Precursor
(pre-Mir +30nt flank)		 
GAAUUUUUGUUCGAUUUUUAUGUGCUGUGUCGCUCAUCAACUGGAUGUGAAAUGGAUUUGUAGCUCAUAUCACAGCCAGCUUUGAUGAGCGCUACAACAUCUAAUAGACACCAUUUUCACAUG
Get precursor sequence
Structure
        10          20        30        40          50          
GAAUUUUUGUUCGAUUU--   U   C    U          --|   A     AAUGGAUUU 
                   UUA GUG UGUG CGCUCAUCAA  CUGG UGUGA         \
                   AAU UAC ACAU GCGAGUAGUU  GACC ACACU         G
GUACACUUUUACCACAGAU   C   A    C          UC^   G     AUACUCGAU 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-2-P3-v2_5p*
mirBase accessionMIMAT0019094
Sequence 
0- CGCUCAUCAACUGGAUGUGAAA -22
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Mature sequence

Tca-Mir-2-P3-v2_3p
mirBase accessionMIMAT0008353
Sequence 
39- UCACAGCCAGCUUUGAUGAGCGCU -63
Get sequence