Mir-2-P3a

MirGeneDB ID

Dsi-Mir-2-P3a

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Fruit fly (Drosophila simulans)

MiRBase ID

dsi-mir-2b-1

Paralogues

Dsi-Mir-2-P1-v1 Dsi-Mir-2-P1-v2 Dsi-Mir-2-P2a Dsi-Mir-2-P2b1 Dsi-Mir-2-P2b2 Dsi-Mir-2-P3b Dsi-Mir-2-P4a-v1 Dsi-Mir-2-P4a-v2 Dsi-Mir-2-P4b-v1 Dsi-Mir-2-P4b-v2 Dsi-Mir-2-P5 Dsi-Mir-2-P6a Dsi-Mir-2-P6b Dsi-Mir-2-P6c Dsi-Mir-2-P7 Dsi-Mir-2-P8 Dsi-Mir-2-P9-v1 Dsi-Mir-2-P9-v2

Orthologues

Aae-Mir-2-P3 Bge-Mir-2-P3 Cbr-Mir-2-o3 Cel-Mir-2-o3 Dan-Mir-2-P3a-v1 Dan-Mir-2-P3a-v2 Dma-Mir-2-P3 Dme-Mir-2-P3a Dpu-Mir-2-P3 Dya-Mir-2-P3a Hme-Mir-2-P3-v1 Hme-Mir-2-P3-v2 Isc-Mir-2-P3 Tca-Mir-2-P3-v1 Tca-Mir-2-P3-v2

Node of Origin (locus)

Drosophila

Node of Origin (family)

Protostomia

Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)

2L: 7986266-7986328 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGCAAAUCAAAAGAACUGAAAACUUCAACUGUCUUCAAAGUGGCGGUGACAUGUUGUCAACAAUAUUCAUAUCACAGCCAGCUUUGAGGAGCGUUGCGGUUUUUCACGCCCGACGACUUAAAA

Get precursor sequence

Structure

        10          20        30        40         50        60
UGCAAAUCAAAAGAACU--       U    UG         -|   G    C   UUGUCA 
                   GAAAACU CAAC  UCUUCAAAG UGGC GUGA AUG      A
                   UUUUUGG GUUG  AGGAGUUUC ACCG CACU UAC      C
AAAAUUCAGCAGCCCGCAC       C    CG         G^   A    A   UUAUAA 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

He	Wh

Star sequence

Dsi-Mir-2-P3a_5p*

mirBase accession

None

Sequence

0- GUCUUCAAAGUGGCGGUGACAUG -23

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Mature sequence

Dsi-Mir-2-P3a_3p

mirBase accession

MIMAT0008858

Sequence

39- UAUCACAGCCAGCUUUGAGGAGCG -63

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