MirGeneDB 3.0
MirGeneDB ID

Bge-Mir-2-P3

Family name MIR-2 (all species)
Species Cockroach (Blattella germanica)
MiRBase ID
Paralogues Bge-Mir-2-P1-v1  Bge-Mir-2-P2a  Bge-Mir-2-P2b  Bge-Mir-2-P4-v1  Bge-Mir-2-P7 
Orthologues Aae-Mir-2-P3  Aga-Mir-2-P3  Cbr-Mir-2-o3  Cel-Mir-2-o3  Csc-Mir-2-P3n  Csc-Mir-2-P3o  Dan-Mir-2-P3a-v1  Dan-Mir-2-P3b  Dlo-Mir-2-P3-v1  Dma-Mir-2-P3  Dme-Mir-2-P3a  Dme-Mir-2-P3b  Dmo-Mir-2-P3b  Dpu-Mir-2-P3  Dsi-Mir-2-P3a  Dsi-Mir-2-P3b  Dya-Mir-2-P3a  Dya-Mir-2-P3b  Gpa-Mir-2-P3a  Gpa-Mir-2-P3b  Gsp-Mir-2  Hme-Mir-2-P3-v1  Isc-Mir-2-P3  Lpo-Mir-2-P3g  Lpo-Mir-2-P3h  Lpo-Mir-2-P3i  Lpo-Mir-2-P3k  Lpo-Mir-2-P3l  Lpo-Mir-2-P3m  Ple-Mir-2  Tca-Mir-2-P3-v1 
Node of Origin (locus) Arthropoda
Node of Origin (family) Protostomia
Genome context
(Bger_2.0)		 KZ615436.1: 353745-353804 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P3-v1)		 Mir-2-P4-v1 KZ615436.1: 350982-351043 [-] Ensembl
Mir-2-P4-v2 KZ615436.1: 350982-351043 [-] Ensembl
Mir-2-P3-v1 KZ615436.1: 353745-353804 [-] Ensembl
Mir-2-P3-v2 KZ615436.1: 353745-353804 [-] Ensembl
Mir-2-P2b KZ615436.1: 353858-353916 [-] Ensembl
Variant

Bge-Mir-2-P3-v1
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
GAAACCAAACAUAAACUGCUUGGUGUGCUGCUCACAAAGCUGUUGUGAUGUGUCGAUUUGAGUUCAUAUCACAGCCAGCUUUGAUGAGCGGCACACUAAGAUGAACUACAGAACUUCAAC
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Structure
        10          20        30         40         50        
GAAACCAAACAUAAACUG--                -       -|          UCGAU 
                    CUUGGUGUGCUGCUCA CAAAGCU GUUGUGAUGUG     U
                    GAAUCACACGGCGAGU GUUUCGA CGACACUAUAC     U
CAACUUCAAGACAUCAAGUA                A       C^          UUGAG 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Ad Ad Co Co Di Di Eg Eg Em Em Em Em Em Em Em Em Em Em Ny Ny Ny Ny Ny Ny Ny Ny Ov
Star sequence

Bge-Mir-2-P3-v1_5p*
mirBase accessionNone
Sequence 
0- CUCACAAAGCUGUUGUGAUGUG -22
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Mature sequence

Bge-Mir-2-P3-v1_3p
mirBase accessionNone
Sequence 
36- UAUCACAGCCAGCUUUGAUGAGCG -60
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Variant

Bge-Mir-2-P3-v2
Seed CACAGCC
Precursor
(pre-Mir +30nt flank)		 
GAAACCAAACAUAAACUGCUUGGUGUGCUGCUCACAAAGCUGUUGUGAUGUGUCGAUUUGAGUUCAUAUCACAGCCAGCUUUGAUGAGCGGCACACUAAGAUGAACUACAGAACUUCAAC
Get precursor sequence
Structure
        10          20        30         40         50        
GAAACCAAACAUAAACUG--                -       -|        UGUCGAU 
                    CUUGGUGUGCUGCUCA CAAAGCU GUUGUGAUG       U
                    GAAUCACACGGCGAGU GUUUCGA CGACACUAU       U
CAACUUCAAGACAUCAAGUA                A       C^        ACUUGAG 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ad Ad Co Co Di Di Eg Eg Em Em Em Em Em Em Em Em Em Em Ny Ny Ny Ny Ny Ny Ny Ny Ov
Star sequence

Bge-Mir-2-P3-v2_5p*
mirBase accessionNone
Sequence 
0- CUCACAAAGCUGUUGUGAUG -20
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Mature sequence

Bge-Mir-2-P3-v2_3p
mirBase accessionNone
Sequence 
38- UCACAGCCAGCUUUGAUGAGCG -60
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