MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-2-P3k

Family name MIR-2 (all species)
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-2-P1g  Lpo-Mir-2-P1h  Lpo-Mir-2-P1i  Lpo-Mir-2-P1j  Lpo-Mir-2-P1k  Lpo-Mir-2-P1l  Lpo-Mir-2-P1m  Lpo-Mir-2-P2g  Lpo-Mir-2-P2h  Lpo-Mir-2-P2j  Lpo-Mir-2-P2l  Lpo-Mir-2-P2m  Lpo-Mir-2-P3g  Lpo-Mir-2-P3h  Lpo-Mir-2-P3i  Lpo-Mir-2-P3l  Lpo-Mir-2-P3m  Lpo-Mir-2-P4h  Lpo-Mir-2-P4i  Lpo-Mir-2-P4j  Lpo-Mir-2-P4k  Lpo-Mir-2-P4l 
Orthologues Aae-Mir-2-P3  Aga-Mir-2-P3  Bge-Mir-2-P3-v1  Cbr-Mir-2-o3  Cel-Mir-2-o3  Dlo-Mir-2-P3-v1  Dma-Mir-2-P3  Dpu-Mir-2-P3  Gsp-Mir-2  Hme-Mir-2-P3-v1  Isc-Mir-2-P3  Ple-Mir-2  Tca-Mir-2-P3-v1 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013666817.1: 133824-133885 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P3k)		 Mir-2-P4k NW_013666817.1: 121381-121442 [-] Ensembl
Mir-2-P3k NW_013666817.1: 133824-133885 [-] Ensembl
Mir-2-P1k NW_013666817.1: 137210-137272 [-] Ensembl
Mir-71-P11 NW_013666817.1: 138297-138356 [-] Ensembl
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
CGCAAGAAAUGUAAAGUCAGUUCCCCAUCACUCACAAAGUGGCUGUUAUAUGCUGCUAAUAGGGUUCAUAUCACAGCCAGCUUUGAUGAGCGAAGAGGAUGCUGUUGGCGUCGAAACCACAC
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Structure
        10         20         30          40        50         
CGCAAGAAAUGUAAAGU-    -   CCA  A    -     -|      U     CUGCUA 
                  CAGU UCC   UC CUCA CAAAG UGGCUGU AUAUG      A
                  GUCG AGG   AG GAGU GUUUC ACCGACA UAUAC      U
CACACCAAAGCUGCGGUU    U   AGA  C    A     G^      C     UUGGGA 
120       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ge Ge So So So To
Star sequence

Lpo-Mir-2-P3k_5p*
mirBase accessionNone
Sequence 
0- CUCACAAAGUGGCUGUUAUAUG -22
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Mature sequence

Lpo-Mir-2-P3k_3p
mirBase accessionNone
Sequence 
38- UAUCACAGCCAGCUUUGAUGAGCG -62
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