MirGeneDB 2.1

MirGeneDB ID

Lpo-Mir-2-P3m

Family name MIR-2 (all species)
Seed AUCACAG
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-2-P1g  Lpo-Mir-2-P1h  Lpo-Mir-2-P1i  Lpo-Mir-2-P1j  Lpo-Mir-2-P1k  Lpo-Mir-2-P1l  Lpo-Mir-2-P1m  Lpo-Mir-2-P2g  Lpo-Mir-2-P2h  Lpo-Mir-2-P2j  Lpo-Mir-2-P2l  Lpo-Mir-2-P2m  Lpo-Mir-2-P3g  Lpo-Mir-2-P3h  Lpo-Mir-2-P3i  Lpo-Mir-2-P3k  Lpo-Mir-2-P3l  Lpo-Mir-2-P4h  Lpo-Mir-2-P4i  Lpo-Mir-2-P4j  Lpo-Mir-2-P4k  Lpo-Mir-2-P4l 
Orthologues Aae-Mir-2-P3  Bge-Mir-2-P3  Cbr-Mir-2-o3  Cel-Mir-2-o3  Dma-Mir-2-P3  Dpu-Mir-2-P3  Hme-Mir-2-P3-v1  Hme-Mir-2-P3-v2  Isc-Mir-2-P3  Tca-Mir-2-P3-v1  Tca-Mir-2-P3-v2 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013668542.1: 87725-87786 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GCCUGAAAGCAGUGAAUCAGGUUUUCAUCACUCACAAAGUGGUUGUUGUAUGCUUCUGCUACUGUUCAUAUCACAGCCAGCUUUGAUGAGUGAAGAAGCUACUGUUGACUUCAGAGUAGUGA
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Structure
        10         20         30          40        50         
GCCUGAAAGCAGUGAAU-   GU-    A       -     -|      U     CUUCUG 
                  CAG   UUUC UCACUCA CAAAG UGGUUGU GUAUG      C
                  GUC   GAAG AGUGAGU GUUUC ACCGACA UAUAC      U
AGUGAUGAGACUUCAGUU   AUC    A       A     G^      C     UUGUCA 
120       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Ma Ma To
Star sequence

Lpo-Mir-2-P3m_5p*

mirBase accessionNone
Sequence
0- CUCACAAAGUGGUUGUUGUAUG -22
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Mature sequence

Lpo-Mir-2-P3m_3p

mirBase accessionNone
Sequence
38- UAUCACAGCCAGCUUUGAUGAGUG -62
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