Mir-2-P4l

MirGeneDB ID

Lpo-Mir-2-P4l

Family name

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-2-P1g Lpo-Mir-2-P1h Lpo-Mir-2-P1i Lpo-Mir-2-P1j Lpo-Mir-2-P1k Lpo-Mir-2-P1l Lpo-Mir-2-P1m Lpo-Mir-2-P2g Lpo-Mir-2-P2h Lpo-Mir-2-P2j Lpo-Mir-2-P2l Lpo-Mir-2-P2m Lpo-Mir-2-P3g Lpo-Mir-2-P3h Lpo-Mir-2-P3i Lpo-Mir-2-P3k Lpo-Mir-2-P3l Lpo-Mir-2-P3m Lpo-Mir-2-P4h Lpo-Mir-2-P4i Lpo-Mir-2-P4j Lpo-Mir-2-P4k

Orthologues

Aae-Mir-2-P4-v1 Aga-Mir-2-P4-v1 Bge-Mir-2-P4-v1 Cbr-Mir-2-o4 Cel-Mir-2-o4 Dma-Mir-2-P4 Dpu-Mir-2-P4 Gsp-Mir-2 Hme-Mir-2-P4 Isc-Mir-2-P4 Ple-Mir-2 Tca-Mir-2-P4-v1

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Protostomia

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013666934.1: 100459-100519 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P4l)

Mir-71-P12 NW_013666934.1: 89649-89707 [+] Ensembl
Mir-2-P1l NW_013666934.1: 91324-91386 [+] Ensembl
Mir-2-P2l NW_013666934.1: 92420-92479 [+] Ensembl
Mir-2-P3l NW_013666934.1: 93277-93337 [+] Ensembl
Mir-2-P4l NW_013666934.1: 100459-100519 [+] Ensembl

Seed

AUCACAG

Precursor
(pre-Mir +30nt flank)

AGUGAGAUGAUGAACAGUCUCAUGACGCCAGUCGUCAGAGUGGCUGUGGUUCGUAAGGGUAACUUCGUAUCACAGCCAGCUUUGAUGAGUGGGGUUGUGGGCCUUACACCUUGGGUUACGU

Get precursor sequence

Structure

        10          20        30        40         50         
AGUGAGAUGAUGAACAGU--    UG  G   G         -|         U  UAAGG 
                    CUCA  AC CCA UCGUCAGAG UGGCUGUGGU CG     G
                    GGGU  UG GGU AGUAGUUUC ACCGACACUA GC     U
UGCAUUGGGUUCCACAUUCC    GU  G   G         G^         U  UUCAA 
 .       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-2-P4l_5p*

mirBase accession

None

Sequence

0- GUCGUCAGAGUGGCUGUGGUUCG -23

Get sequence

Mature sequence

Lpo-Mir-2-P4l_3p

mirBase accession

None

Sequence

37- UAUCACAGCCAGCUUUGAUGAGUG -61

Get sequence