MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-2-P4

Family name MIR-2 (all species)
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-2-2
Paralogues Tca-Mir-2-P1-v1  Tca-Mir-2-P2a  Tca-Mir-2-P2b  Tca-Mir-2-P3-v1  Tca-Mir-2-P5c  Tca-Mir-2-P5d  Tca-Mir-2-P5e  Tca-Mir-2-P7  Tca-Mir-2-P8 
Orthologues Aae-Mir-2-P4-v1  Aga-Mir-2-P4-v1  Bge-Mir-2-P4-v1  Cbr-Mir-2-o4  Cel-Mir-2-o4  Csc-Mir-2-P4n  Csc-Mir-2-P4o  Dan-Mir-2-P4a-v1  Dan-Mir-2-P4b-v1  Dma-Mir-2-P4  Dme-Mir-2-P4a-v1  Dme-Mir-2-P4b-v1  Dmo-Mir-2-P4a-v1  Dmo-Mir-2-P4b-v1  Dpu-Mir-2-P4  Dsi-Mir-2-P4a-v1  Dsi-Mir-2-P4b-v1  Dya-Mir-2-P4a-v1  Dya-Mir-2-P4b-v1  Gpa-Mir-2-P4a-v1  Gpa-Mir-2-P4b-v1  Gsp-Mir-2  Hme-Mir-2-P4  Isc-Mir-2-P4  Lpo-Mir-2-P4h  Lpo-Mir-2-P4i  Lpo-Mir-2-P4j  Lpo-Mir-2-P4k  Lpo-Mir-2-P4l  Ple-Mir-2 
Node of Origin (locus) Arthropoda
Node of Origin (family) Protostomia
Genome context
(Tcas5.2)		 LG3: 561350-561410 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P4-v1)		 Mir-3842 LG3: 559294-559352 [+] Ensembl
Mir-71 LG3: 560714-560776 [+] Ensembl
Mir-2-P1-v1 LG3: 560832-560890 [+] Ensembl
Mir-2-P1-v2 LG3: 560833-560889 [+] Ensembl
Mir-2-P2a LG3: 560954-561011 [+] Ensembl
Mir-2-P2b LG3: 561066-561124 [+] Ensembl
Mir-2-P3-v2 LG3: 561198-561260 [+] Ensembl
Mir-2-P3-v1 LG3: 561200-561258 [+] Ensembl
Mir-2-P4-v2 LG3: 561348-561412 [+] Ensembl
Mir-2-P4-v1 LG3: 561350-561410 [+] Ensembl
Variant

Tca-Mir-2-P4-v1
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
UUUGUACGAUUUUUCAUGGUGUAGGCUUUCGCUCAUCAUCUGGUUGUGAAAUGUGAAUUUAUAUCAUAUCACAGCCAGCUUUGAUGAGCGCAAGAGUGCACUGAUGACGUCAGGUACGAAA
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Structure
        10          20        30          40        50         
UUUGUACGAUUUUUCAU--      GG   U         U--|         A   UGAAU 
                   GGUGUA  CUU CGCUCAUCA   CUGGUUGUGA AUG     \
                   UCACGU  GAA GCGAGUAGU   GACCGACACU UAC     U
AAAGCAUGGACUGCAGUAG      GA   C         UUC^         A   UAUAU 
 .       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-2-P4-v1_5p*
mirBase accessionMIMAT0019096
Sequence 
0- GCUCAUCAUCUGGUUGUGAAAUG -23
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Mature sequence

Tca-Mir-2-P4-v1_3p
mirBase accessionMIMAT0008353
Sequence 
36- UAUCACAGCCAGCUUUGAUGAGCGC -61
Get sequence
Variant

Tca-Mir-2-P4-v2
Seed CACAGCC
Precursor
(pre-Mir +30nt flank)		 
UUUUUGUACGAUUUUUCAUGGUGUAGGCUUUCGCUCAUCAUCUGGUUGUGAAAUGUGAAUUUAUAUCAUAUCACAGCCAGCUUUGAUGAGCGCAAGAGUGCACUGAUGACGUCAGGUACGAAACU
Get precursor sequence
Structure
        10          20        30        40          50        60 
UUUUUGUACGAUUUUUCAU--      GG   U         U--|         AAUGUGAAU 
                     GGUGUA  CUU CGCUCAUCA   CUGGUUGUGA         \
                     UCACGU  GAA GCGAGUAGU   GACCGACACU         U
UCAAAGCAUGGACUGCAGUAG      GA   C         UUC^         AUACUAUAU 
   120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
- +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-2-P4-v2_5p*
mirBase accessionMIMAT0019096
Sequence 
0- UCGCUCAUCAUCUGGUUGUGAAA -23
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Mature sequence

Tca-Mir-2-P4-v2_3p
mirBase accessionMIMAT0008353
Sequence 
40- UCACAGCCAGCUUUGAUGAGCGCAA -65
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