MirGeneDB 3.0
MirGeneDB ID

Dma-Mir-2-P4

Family name MIR-2 (all species)
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues Dma-Mir-2-o2  Dma-Mir-2-P1  Dma-Mir-2-P2  Dma-Mir-2-P3  Dma-Mir-2-P5 
Orthologues Aae-Mir-2-P4-v1  Aga-Mir-2-P4-v1  Bge-Mir-2-P4-v1  Cbr-Mir-2-o4  Cel-Mir-2-o4  Csc-Mir-2-P4n  Csc-Mir-2-P4o  Dan-Mir-2-P4a-v1  Dan-Mir-2-P4b-v1  Dme-Mir-2-P4a-v1  Dme-Mir-2-P4b-v1  Dmo-Mir-2-P4a-v1  Dmo-Mir-2-P4b-v1  Dpu-Mir-2-P4  Dsi-Mir-2-P4a-v1  Dsi-Mir-2-P4b-v1  Dya-Mir-2-P4a-v1  Dya-Mir-2-P4b-v1  Gpa-Mir-2-P4a-v1  Gpa-Mir-2-P4b-v1  Gsp-Mir-2  Hme-Mir-2-P4  Isc-Mir-2-P4  Lpo-Mir-2-P4h  Lpo-Mir-2-P4i  Lpo-Mir-2-P4j  Lpo-Mir-2-P4k  Lpo-Mir-2-P4l  Ple-Mir-2  Tca-Mir-2-P4-v1 
Node of Origin (locus) Arthropoda
Node of Origin (family) Protostomia
Genome context
(DMA_ASM399081)		 NC_046175.1: 11974083-11974146 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P4)		 Mir-71 NC_046175.1: 11973451-11973516 [+] Ensembl
Mir-2-P1 NC_046175.1: 11973585-11973670 [+] Ensembl
Mir-2-P2 NC_046175.1: 11973770-11973832 [+] Ensembl
Mir-2-P3 NC_046175.1: 11973888-11973956 [+] Ensembl
Mir-2-P4 NC_046175.1: 11974083-11974146 [+] Ensembl
Seed UUGUCAG
Precursor
(pre-Mir +30nt flank)		 
GAUUUACGAGAAUCGUGUUGUGUGUAUUAGCUUGUCAGAGUGGUUGUGGUGUGUGUCUUUGUCGUACUCGUAUCACAGCCAGCUUUGAUGAGCGCUACGCUCGACUUGUUGCGUCGCAUACCUU
Get precursor sequence
Structure
        10           20        30        40         50        60 
GAUUUACGAGAAUCGUG---|  U     UUA   UG      -             UGUCUUU 
                    UUG GUGUA   GCU  UCAGAG UGGUUGUGGUGUG       \
                    AGC CGCAU   CGA  AGUUUC ACCGACACUAUGC       G
UUCCAUACGCUGCGUUGUUC^  U     CG-   GU      G             UCAUGCU 
  120       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Mature sequence

Dma-Mir-2-P4_5p
mirBase accessionNone
Sequence 
0- CUUGUCAGAGUGGUUGUGGUGUG -23
Get sequence
Star sequence

Dma-Mir-2-P4_3p*
mirBase accessionNone
Sequence 
40- UAUCACAGCCAGCUUUGAUGAGCG -64
Get sequence