MirGeneDB 3.0
MirGeneDB ID

Bge-Mir-2-P4

Family name MIR-2 (all species)
Species Cockroach (Blattella germanica)
MiRBase ID
Paralogues Bge-Mir-2-P1-v1  Bge-Mir-2-P2a  Bge-Mir-2-P2b  Bge-Mir-2-P3-v1  Bge-Mir-2-P7 
Orthologues Aae-Mir-2-P4-v1  Aga-Mir-2-P4-v1  Cbr-Mir-2-o4  Cel-Mir-2-o4  Csc-Mir-2-P4n  Csc-Mir-2-P4o  Dan-Mir-2-P4a-v1  Dan-Mir-2-P4b-v1  Dma-Mir-2-P4  Dme-Mir-2-P4a-v1  Dme-Mir-2-P4b-v1  Dmo-Mir-2-P4a-v1  Dmo-Mir-2-P4b-v1  Dpu-Mir-2-P4  Dsi-Mir-2-P4a-v1  Dsi-Mir-2-P4b-v1  Dya-Mir-2-P4a-v1  Dya-Mir-2-P4b-v1  Gpa-Mir-2-P4a-v1  Gpa-Mir-2-P4b-v1  Gsp-Mir-2  Hme-Mir-2-P4  Isc-Mir-2-P4  Lpo-Mir-2-P4h  Lpo-Mir-2-P4i  Lpo-Mir-2-P4j  Lpo-Mir-2-P4k  Lpo-Mir-2-P4l  Ple-Mir-2  Tca-Mir-2-P4-v1 
Node of Origin (locus) Arthropoda
Node of Origin (family) Protostomia
Genome context
(Bger_2.0)		 KZ615436.1: 350982-351043 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P4-v1)		 Mir-2-P4-v1 KZ615436.1: 350982-351043 [-] Ensembl
Mir-2-P4-v2 KZ615436.1: 350982-351043 [-] Ensembl
Mir-2-P3-v1 KZ615436.1: 353745-353804 [-] Ensembl
Mir-2-P3-v2 KZ615436.1: 353745-353804 [-] Ensembl
Mir-2-P2b KZ615436.1: 353858-353916 [-] Ensembl
Variant

Bge-Mir-2-P4-v1
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
UGAUAGUUCGGAGAUUAUGAUCUCAUUGCCCUCGUCAGAGUGGUUAUGAUGUGUCUAUAUUAAUUUCAUAUCACAGCCAGCUUUGAUGAGCGCAAAGGGAUUCUAAACACCUUUUAAGAAAA
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Structure
        10          20        30        40         50          
UGAUAGUUCGGAGAUUAU--      A    C          -|    A       UCUAUA 
                    GAUCUC UUGC CUCGUCAGAG UGGUU UGAUGUG      \
                    UUAGGG AACG GAGUAGUUUC ACCGA ACUAUAC      U
AAAAGAAUUUUCCACAAAUC      A    C          G^    C       UUUAAU 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Co Co Di Di Eg Eg Em Em Em Em Em Em Em Em Em Em Ny Ny Ny Ny Ny Ny Ny Ny Ov
Star sequence

Bge-Mir-2-P4-v1_5p*
mirBase accessionNone
Sequence 
0- CUCGUCAGAGUGGUUAUGAUGUG -23
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Mature sequence

Bge-Mir-2-P4-v1_3p
mirBase accessionNone
Sequence 
38- UAUCACAGCCAGCUUUGAUGAGCG -62
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Variant

Bge-Mir-2-P4-v2
Seed CACAGCC
Precursor
(pre-Mir +30nt flank)		 
UGAUAGUUCGGAGAUUAUGAUCUCAUUGCCCUCGUCAGAGUGGUUAUGAUGUGUCUAUAUUAAUUUCAUAUCACAGCCAGCUUUGAUGAGCGCAAAGGGAUUCUAAACACCUUUUAAGAAAA
Get precursor sequence
Structure
        10          20        30        40         50          
UGAUAGUUCGGAGAUUAU--      A    C          -|    A     UGUCUAUA 
                    GAUCUC UUGC CUCGUCAGAG UGGUU UGAUG        \
                    UUAGGG AACG GAGUAGUUUC ACCGA ACUAU        U
AAAAGAAUUUUCCACAAAUC      A    C          G^    C     ACUUUAAU 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ad Ad Co Co Di Di Eg Eg Em Em Em Em Em Em Em Em Em Em Ny Ny Ny Ny Ny Ny Ny Ny Ov
Star sequence

Bge-Mir-2-P4-v2_5p*
mirBase accessionNone
Sequence 
0- CUCGUCAGAGUGGUUAUGAUG -21
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Mature sequence

Bge-Mir-2-P4-v2_3p
mirBase accessionNone
Sequence 
40- UCACAGCCAGCUUUGAUGAGCG -62
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