MirGeneDB 3.0
MirGeneDB ID

Dme-Mir-2-P4b

Family name MIR-2 (all species)
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-2a-2
Paralogues Dme-Mir-2-P1-v1  Dme-Mir-2-P2a  Dme-Mir-2-P2b1  Dme-Mir-2-P2b2  Dme-Mir-2-P3a  Dme-Mir-2-P3b  Dme-Mir-2-P4a-v1  Dme-Mir-2-P5  Dme-Mir-2-P6a  Dme-Mir-2-P6b  Dme-Mir-2-P6c  Dme-Mir-2-P7  Dme-Mir-2-P8-v1  Dme-Mir-2-P9-v1 
Orthologues Aae-Mir-2-P4-v1  Aga-Mir-2-P4-v1  Bge-Mir-2-P4-v1  Cbr-Mir-2-o4  Cel-Mir-2-o4  Dan-Mir-2-P4b-v1  Dma-Mir-2-P4  Dmo-Mir-2-P4b-v1  Dpu-Mir-2-P4  Dsi-Mir-2-P4b-v1  Dya-Mir-2-P4b-v1  Gpa-Mir-2-P4b-v1  Gsp-Mir-2  Hme-Mir-2-P4  Isc-Mir-2-P4  Ple-Mir-2  Tca-Mir-2-P4-v1 
Node of Origin (locus) Glossinidae + Drosophilidae
Node of Origin (family) Protostomia
Genome context
(Drosophila_melanogaster_BDGP6)		 2L: 19569495-19569554 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P4b-v1)		 Mir-2-P4b-v1 2L: 19569495-19569554 [-] UCSC Ensembl
Mir-2-P4b-v2 2L: 19569495-19569554 [-] UCSC Ensembl
Mir-2-P4a-v1 2L: 19569901-19569966 [-] UCSC Ensembl
Mir-2-P4a-v2 2L: 19569901-19569966 [-] UCSC Ensembl
Mir-2-P3b 2L: 19570188-19570256 [-] UCSC Ensembl
Variant

Dme-Mir-2-P4b-v1
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
UCCUUACCUGUACGAUGUUGAUUAUCUAAGCCUCAUCAAGUGGUUGUGAUAUGGAUACCCAACGCAUAUCACAGCCAGCUUUGAUGAGCUAGGAUAAUCAACGGGAGACAACGUAAAUGA
Get precursor sequence
Structure
        10          20        30        40          50         
UCCUUACCUGUACGAUG--          A  C         --|            GAUAC 
                   UUGAUUAUCU AG CUCAUCAAG  UGGUUGUGAUAUG     \
                   AACUAAUAGG UC GAGUAGUUU  ACCGACACUAUAC     C
AGUAAAUGCAACAGAGGGC          A  -         CG^            GCAAC 
.       110       100        90         80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
- +
Bo He He La Ov Sa Wh
Star sequence

Dme-Mir-2-P4b-v1_5p*
mirBase accessionMIMAT0020781
Sequence 
0- CCUCAUCAAGUGGUUGUGAUAUG -23
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Mature sequence

Dme-Mir-2-P4b-v1_3p
mirBase accessionMIMAT0000106
Sequence 
36- UAUCACAGCCAGCUUUGAUGAGCU -60
Get sequence
Proposed targets microrna.org: MIMAT0000106
Variant

Dme-Mir-2-P4b-v2
Seed CACAGCC
Precursor
(pre-Mir +30nt flank)		 
UCCUUACCUGUACGAUGUUGAUUAUCUAAGCCUCAUCAAGUGGUUGUGAUAUGGAUACCCAACGCAUAUCACAGCCAGCUUUGAUGAGCUAGGAUAAUCAACGGGAGACAACGUAAAUGA
Get precursor sequence
Structure
        10          20        30        40          50         
UCCUUACCUGUACGAUG--          A  C         --|          UGGAUAC 
                   UUGAUUAUCU AG CUCAUCAAG  UGGUUGUGAUA       \
                   AACUAAUAGG UC GAGUAGUUU  ACCGACACUAU       C
AGUAAAUGCAACAGAGGGC          A  -         CG^          ACGCAAC 
.       110       100        90         80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
- +
Bo He He La Ov Sa Wh
Star sequence

Dme-Mir-2-P4b-v2_5p*
mirBase accessionMIMAT0020781
Sequence 
0- CCUCAUCAAGUGGUUGUGAUA -21
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Mature sequence

Dme-Mir-2-P4b-v2_3p
mirBase accessionMIMAT0000106
Sequence 
38- UCACAGCCAGCUUUGAUGAGCU -60
Get sequence
Proposed targets microrna.org: MIMAT0000106