MirGeneDB 2.1

MirGeneDB ID

Cbr-Mir-2-o4

Family name MIR-2 (all species)
Seed AUCACAG
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-43
Paralogues Cbr-Mir-2-o3  Cbr-Mir-2-P11 
Orthologues Aae-Mir-2-P4-v1  Aae-Mir-2-P4-v2  Bge-Mir-2-P4c-v1  Bge-Mir-2-P4c-v2  Bge-Mir-2-P4d-v1  Bge-Mir-2-P4d-v2  Cel-Mir-2-o4  Csc-Mir-2-P4n  Csc-Mir-2-P4o  Dan-Mir-2-P4a-v1  Dan-Mir-2-P4a-v2  Dan-Mir-2-P4b-v1  Dan-Mir-2-P4b-v2  Dma-Mir-2-P4  Dme-Mir-2-P4a-v1  Dme-Mir-2-P4a-v2  Dme-Mir-2-P4b-v1  Dme-Mir-2-P4b-v2  Dmo-Mir-2-P4a-v1  Dmo-Mir-2-P4a-v2  Dmo-Mir-2-P4b-v1  Dmo-Mir-2-P4b-v2  Dpu-Mir-2-P4  Dsi-Mir-2-P4a-v1  Dsi-Mir-2-P4a-v2  Dsi-Mir-2-P4b-v1  Dsi-Mir-2-P4b-v2  Dya-Mir-2-P4a-v1  Dya-Mir-2-P4a-v2  Dya-Mir-2-P4b-v1  Dya-Mir-2-P4b-v2  Hme-Mir-2-P4  Isc-Mir-2-P4  Lpo-Mir-2-P4h  Lpo-Mir-2-P4i  Lpo-Mir-2-P4j  Lpo-Mir-2-P4k  Lpo-Mir-2-P4l  Tca-Mir-2-P4-v1  Tca-Mir-2-P4-v2 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Protostomia
Genome context
(CB4)
II: 8891220-8891282 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-o4)
Mir-279-o7 II: 8891068-8891135 [-] Ensembl
Mir-2-o4 II: 8891220-8891282 [-] Ensembl
Mir-36-o25 II: 8891373-8891435 [-] Ensembl
Mir-279-o8a II: 8900359-8900424 [-] Ensembl
Mir-279-o8b II: 8903154-8903219 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAACAUAAGAAAAGAGGCGAUUCUGCCCGUGACAUCAAGAUGCUUGUGAUUAUGCGAAAAUGUUGGGACAUAUCACAGUUUACUUGCUGUCGCAGGCGGAUUAUUGCUAUUGCUCAUUUUGUG
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Structure
        10        20          30        40         50        60 
AAACAUAAGAAAAGAGGCGAU--      C      U    AU-|  U     U   CGAAAA 
                       UCUGCC GUGACA CAAG   GCU GUGAU AUG      U
                       AGGCGG CGCUGU GUUC   UGA CACUA UAC      G
GUGUUUUACUCGUUAUCGUUAUU      A      C    AUU^  -     -   AGGGUU 
 120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Star sequence

Cbr-Mir-2-o4_5p*

mirBase accessionNone
Sequence
0- GACAUCAAGAUGCUUGUGAUUAUG -24
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Mature sequence

Cbr-Mir-2-o4_3p

mirBase accessionMIMAT0000468
Sequence
40- UAUCACAGUUUACUUGCUGUCGC -63
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