Mir-2-P4k

MirGeneDB ID

Lpo-Mir-2-P4k

Family name

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-2-P1g Lpo-Mir-2-P1h Lpo-Mir-2-P1i Lpo-Mir-2-P1j Lpo-Mir-2-P1k Lpo-Mir-2-P1l Lpo-Mir-2-P1m Lpo-Mir-2-P2g Lpo-Mir-2-P2h Lpo-Mir-2-P2j Lpo-Mir-2-P2l Lpo-Mir-2-P2m Lpo-Mir-2-P3g Lpo-Mir-2-P3h Lpo-Mir-2-P3i Lpo-Mir-2-P3k Lpo-Mir-2-P3l Lpo-Mir-2-P3m Lpo-Mir-2-P4h Lpo-Mir-2-P4i Lpo-Mir-2-P4j Lpo-Mir-2-P4l

Orthologues

Aae-Mir-2-P4-v1 Aga-Mir-2-P4-v1 Bge-Mir-2-P4-v1 Cbr-Mir-2-o4 Cel-Mir-2-o4 Dma-Mir-2-P4 Dpu-Mir-2-P4 Gsp-Mir-2 Hme-Mir-2-P4 Isc-Mir-2-P4 Ple-Mir-2 Tca-Mir-2-P4-v1

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Protostomia

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013666817.1: 121381-121442 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P4k)

Mir-2-P4k NW_013666817.1: 121381-121442 [-] Ensembl
Mir-2-P3k NW_013666817.1: 133824-133885 [-] Ensembl
Mir-2-P1k NW_013666817.1: 137210-137272 [-] Ensembl
Mir-71-P11 NW_013666817.1: 138297-138356 [-] Ensembl

Seed

AUCACAG

Precursor
(pre-Mir +30nt flank)

UCUUCGUAAUAUAUUAAUCCCAUGUCUUCGGUCGUCAGAGUGGUUGUGAUAUGUUAUCUUUUAAAUCAUAUCACAGCCAGCUUUGAUGAGCGGAGAUGCAGGUUUCAAGCACAUUUUAUUAA

Get precursor sequence

Structure

        10          20        30        40         50          
UCUUCGUAAUAUAUUAAU--  CA        G         -|            UUAUCU 
                    CC  UGUCUUCG UCGUCAGAG UGGUUGUGAUAUG      \
                    GG  GUAGAGGC AGUAGUUUC ACCGACACUAUAC      U
AAUUAUUUUACACGAACUUU  AC        G         G^            UAAAUU 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-2-P4k_5p*

mirBase accession

None

Sequence

0- GUCGUCAGAGUGGUUGUGAUAUG -23

Get sequence

Mature sequence

Lpo-Mir-2-P4k_3p

mirBase accession

None

Sequence

38- UAUCACAGCCAGCUUUGAUGAGCG -62

Get sequence