MirGeneDB 2.1
MirGeneDB ID

Lpo-Mir-2-P4i

Family name MIR-2 (all species)
Seed AUCACAG
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-2-P1g  Lpo-Mir-2-P1h  Lpo-Mir-2-P1i  Lpo-Mir-2-P1j  Lpo-Mir-2-P1k  Lpo-Mir-2-P1l  Lpo-Mir-2-P1m  Lpo-Mir-2-P2g  Lpo-Mir-2-P2h  Lpo-Mir-2-P2j  Lpo-Mir-2-P2l  Lpo-Mir-2-P2m  Lpo-Mir-2-P3g  Lpo-Mir-2-P3h  Lpo-Mir-2-P3i  Lpo-Mir-2-P3k  Lpo-Mir-2-P3l  Lpo-Mir-2-P3m  Lpo-Mir-2-P4h  Lpo-Mir-2-P4j  Lpo-Mir-2-P4k  Lpo-Mir-2-P4l 
Orthologues Aae-Mir-2-P4-v1  Aae-Mir-2-P4-v2  Cbr-Mir-2-o4  Cel-Mir-2-o4  Dma-Mir-2-P4  Dpu-Mir-2-P4  Hme-Mir-2-P4  Isc-Mir-2-P4  Tca-Mir-2-P4-v1  Tca-Mir-2-P4-v2 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013665749.1: 433863-433924 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUGGUUGCAUGUCAUCUUAGCCUGUCUUCGGUCGUCAGAGUGGUUGUGAUGUGUUUUCUGUCAAAUCAUAUCACAGCCAGCUUUGAUGAGCGGAGAUGUUGUGCUUAACUUCUUCAAUUUUA
Get precursor sequence
Structure
        10            20        30        40         50          
AUGGUUGCAUGUCAUCU----|   CU       G         -             UUUUCU 
                     UAGC  GUCUUCG UCGUCAGAG UGGUUGUGAUGUG      \
                     GUUG  UAGAGGC AGUAGUUUC ACCGACACUAUAC      G
AUUUUAACUUCUUCAAUUCGU^   --       G         G             UAAACU 
120       110       100          90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Fe Fe Fe Ma Ma To
Star sequence

Lpo-Mir-2-P4i_5p*
mirBase accessionNone
Sequence 
0- GUCGUCAGAGUGGUUGUGAUGUG -23
Get sequence
Mature sequence

Lpo-Mir-2-P4i_3p
mirBase accessionNone
Sequence 
38- UAUCACAGCCAGCUUUGAUGAGCG -62
Get sequence