Mir-2-P4h

MirGeneDB ID

Lpo-Mir-2-P4h

Family name

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-2-P1g Lpo-Mir-2-P1h Lpo-Mir-2-P1i Lpo-Mir-2-P1j Lpo-Mir-2-P1k Lpo-Mir-2-P1l Lpo-Mir-2-P1m Lpo-Mir-2-P2g Lpo-Mir-2-P2h Lpo-Mir-2-P2j Lpo-Mir-2-P2l Lpo-Mir-2-P2m Lpo-Mir-2-P3g Lpo-Mir-2-P3h Lpo-Mir-2-P3i Lpo-Mir-2-P3k Lpo-Mir-2-P3l Lpo-Mir-2-P3m Lpo-Mir-2-P4i Lpo-Mir-2-P4j Lpo-Mir-2-P4k Lpo-Mir-2-P4l

Orthologues

Aae-Mir-2-P4-v1 Aga-Mir-2-P4-v1 Bge-Mir-2-P4-v1 Cbr-Mir-2-o4 Cel-Mir-2-o4 Dma-Mir-2-P4 Dpu-Mir-2-P4 Gsp-Mir-2 Hme-Mir-2-P4 Isc-Mir-2-P4 Ple-Mir-2 Tca-Mir-2-P4-v1

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Protostomia

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013665701.1: 190384-190443 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P4h)

Mir-2-P4h NW_013665701.1: 190384-190443 [-] Ensembl
Mir-2-P3h NW_013665701.1: 195178-195239 [-] Ensembl
Mir-2-P2h NW_013665701.1: 196891-196951 [-] Ensembl
Mir-2-P1h NW_013665701.1: 198227-198286 [-] Ensembl
Mir-71-P8 NW_013665701.1: 206173-206230 [-] Ensembl

Seed

AUCACAG

Precursor
(pre-Mir +30nt flank)

AAAAUUGUUUUAAUCUUUUCCAUGAUUCCACUCGUCAAAGAGGCUUUGAUUCGUUAAGUAACUUCGUAUCACAGCCAGUUUUGAUGAGUGGAACUGUGGGCUAACCUCUUACUAGACAUA

Get precursor sequence

Structure

        10          20        30        40         50         
AAAAUUGUUUUAAUCUUU--     GA               A-|   U    U  UUAAG 
                    UCCAU  UUCCACUCGUCAAAG  GGCU UGAU CG     \
                    GGGUG  AAGGUGAGUAGUUUU  CCGA ACUA GC     U
AUACAGAUCAUUCUCCAAUC     UC               GA^   C    U  UUCAA 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-2-P4h_5p* (predicted)

mirBase accession

None

Sequence

0- CUCGUCAAAGAGGCUUUGAUUCG -23

Get sequence

Mature sequence

Lpo-Mir-2-P4h_3p

mirBase accession

None

Sequence

36- UAUCACAGCCAGUUUUGAUGAGUG -60

Get sequence