MirGeneDB 3.0
MirGeneDB ID

Cbr-Mir-36-o25

Family name MIR-36 (all species)
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-42
Paralogues Cbr-Mir-36-o1  Cbr-Mir-36-o2  Cbr-Mir-36-o3  Cbr-Mir-36-o4  Cbr-Mir-36-o5  Cbr-Mir-36-o6  Cbr-Mir-36-o7a  Cbr-Mir-36-o7b  Cbr-Mir-36-o7c  Cbr-Mir-36-o8a  Cbr-Mir-36-o8b  Cbr-Mir-36-o8c  Cbr-Mir-36-o9  Cbr-Mir-36-o10  Cbr-Mir-36-o11  Cbr-Mir-36-o12  Cbr-Mir-36-o13  Cbr-Mir-36-o14  Cbr-Mir-36-o15  Cbr-Mir-36-o16  Cbr-Mir-36-o17  Cbr-Mir-36-o18  Cbr-Mir-36-o19  Cbr-Mir-36-o20  Cbr-Mir-36-o21  Cbr-Mir-36-o22  Cbr-Mir-36-o23  Cbr-Mir-36-o24  Cbr-Mir-36-o26 
Orthologues Agr-Mir-36  Bge-Mir-36  Cte-Mir-36  Dgr-Mir-36  Dlo-Mir-36  Dma-Mir-36  Dpu-Mir-36  Eba-Mir-36  Gsp-Mir-36  Isc-Mir-36  Lhy-Mir-36  Llo-Mir-36  Mgi-Mir-36  Mom-Mir-36  Npo-Mir-36  Ofu-Mir-36  Pau-Mir-36  Pca-Mir-36-P25  Pcr-Mir-36  Pdu-Mir-36  Pve-Mir-36  Rph-Mir-36  Snu-Mir-36  Tca-Mir-36  War-Mir-36 
Node of Origin (locus) C. briggsae
Node of Origin (family) Protostomia
Genome context
(CB4)		 II: 8891373-8891435 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-36-o25)		 Mir-279-P10 II: 8891068-8891135 [-] Ensembl
Mir-2-o4 II: 8891220-8891282 [-] Ensembl
Mir-36-o25 II: 8891373-8891435 [-] Ensembl
Mir-279-P11a II: 8900359-8900424 [-] Ensembl
Mir-279-P11b II: 8903154-8903219 [+] Ensembl
Seed CACCGGG
Precursor
(pre-Mir +30nt flank)		 
AUAUUCCACCUAUAACCCUUGUCGGACCUUUGUGGGUGUUCGCCUUUUCGGUGAAGUUACUGAAUGCUUCUUCACCGGGUUAACAUCUACAGAGGUCCUAAAGGGUUCCAUGACCCAUGACCC
Get precursor sequence
Structure
        10           20        30        40        50        60   
AUAUUCCACCUAUAACC---|  GUC                 C   UUUU        UUACUG 
                    CUU   GGACCUUUGUGGGUGUU GCC    CGGUGAAG      \
                    GAA   CCUGGAGACAUCUACAA UGG    GCCACUUC      A
CCCAGUACCCAGUACCUUGG^  AU-                 U   ----        UUCGUA 
 120       110       100         90        80            70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Star sequence

Cbr-Mir-36-o25_5p*
mirBase accessionNone
Sequence 
0- UGUGGGUGUUCGCCUUUUCGGUGAAG -26
Get sequence
Mature sequence

Cbr-Mir-36-o25_3p
mirBase accessionMIMAT0000467
Sequence 
41- UCACCGGGUUAACAUCUACAGA -63
Get sequence