MirGeneDB 3.0
MirGeneDB ID

Cbr-Mir-36-o22

Family name MIR-36 (all species)
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-40
Paralogues Cbr-Mir-36-o1  Cbr-Mir-36-o2  Cbr-Mir-36-o3  Cbr-Mir-36-o4  Cbr-Mir-36-o5  Cbr-Mir-36-o6  Cbr-Mir-36-o7a  Cbr-Mir-36-o7b  Cbr-Mir-36-o7c  Cbr-Mir-36-o8a  Cbr-Mir-36-o8b  Cbr-Mir-36-o8c  Cbr-Mir-36-o9  Cbr-Mir-36-o10  Cbr-Mir-36-o11  Cbr-Mir-36-o12  Cbr-Mir-36-o13  Cbr-Mir-36-o14  Cbr-Mir-36-o15  Cbr-Mir-36-o16  Cbr-Mir-36-o17  Cbr-Mir-36-o18  Cbr-Mir-36-o19  Cbr-Mir-36-o20  Cbr-Mir-36-o21  Cbr-Mir-36-o23  Cbr-Mir-36-o24  Cbr-Mir-36-o25  Cbr-Mir-36-o26 
Orthologues Agr-Mir-36  Bge-Mir-36  Cte-Mir-36  Dgr-Mir-36  Dlo-Mir-36  Dma-Mir-36  Dpu-Mir-36  Eba-Mir-36  Gsp-Mir-36  Isc-Mir-36  Lhy-Mir-36  Llo-Mir-36  Mgi-Mir-36  Mom-Mir-36  Npo-Mir-36  Ofu-Mir-36  Pau-Mir-36  Pcr-Mir-36  Pdu-Mir-36  Pve-Mir-36  Rph-Mir-36  Sne-Mir-36-P22  Snu-Mir-36  Tca-Mir-36  War-Mir-36 
Node of Origin (locus) C. briggsae
Node of Origin (family) Protostomia
Genome context
(CB4)		 II: 8377946-8378013 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-36-o22)		 Mir-36-o19 II: 8377574-8377633 [+] Ensembl
Mir-36-o20 II: 8377669-8377736 [+] Ensembl
Mir-36-o21 II: 8377847-8377908 [+] Ensembl
Mir-36-o22 II: 8377946-8378013 [+] Ensembl
Mir-36-o24 II: 8378068-8378133 [+] Ensembl
Mir-36-o13 II: 8378188-8378247 [+] Ensembl
Mir-36-o23 II: 8378304-8378369 [+] Ensembl
Mir-36-o1 II: 8378426-8378486 [+] Ensembl
Seed CACCGGG
Precursor
(pre-Mir +30nt flank)		 
AAGCAUCUCUGUAUCCCCUGCCCUCACCCCAGCGGGUUUUCAUCGCAGUGAUAUGACGCAUUCAAACCAUUUCUUAUCACCGGGUGUCAAUCAGCUAGGGUGUGGGCGCGGGUAUCCACAGAGGUAAG
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Structure
        10          20        30        40        50        60    
AAGCAUCUCUGUAUCCCCU--|   U     C   G    UU    GCA      UGACGCAUUC 
                     GCCC CACCC AGC GGUU  CAUC   GUGAUA          \
                     CGGG GUGGG UCG CUAA  GUGG   CACUAU          A
GAAUGGAGACACCUAUGGGCG^   U     A   A    CU    GC-      UCUUUACCAA 
      120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Star sequence

Cbr-Mir-36-o22_5p*
mirBase accessionNone
Sequence 
0- AGCGGGUUUUCAUCGCAGUGAUA -23
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Mature sequence

Cbr-Mir-36-o22_3p
mirBase accessionMIMAT0001317
Sequence 
46- UCACCGGGUGUCAAUCAGCUAG -68
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