Mir-36-o20

MirGeneDB ID

Cbr-Mir-36-o20

Family name

MIR-36 (all species)

Seed

CCGGGUU

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-38

Paralogues

Cbr-Mir-36-o1 Cbr-Mir-36-o2 Cbr-Mir-36-o3 Cbr-Mir-36-o4 Cbr-Mir-36-o5 Cbr-Mir-36-o6 Cbr-Mir-36-o7a Cbr-Mir-36-o7b Cbr-Mir-36-o7c Cbr-Mir-36-o8a Cbr-Mir-36-o8b Cbr-Mir-36-o8c Cbr-Mir-36-o9 Cbr-Mir-36-o10 Cbr-Mir-36-o11 Cbr-Mir-36-o12 Cbr-Mir-36-o13 Cbr-Mir-36-o14 Cbr-Mir-36-o15 Cbr-Mir-36-o16 Cbr-Mir-36-o17 Cbr-Mir-36-o18 Cbr-Mir-36-o19 Cbr-Mir-36-o21 Cbr-Mir-36-o22 Cbr-Mir-36-o23 Cbr-Mir-36-o24 Cbr-Mir-36-o25 Cbr-Mir-36-o26

Orthologues

Bge-Mir-36 Cgi-Mir-36 Cte-Mir-36 Dma-Mir-36 Dpu-Mir-36 Isc-Mir-36 Npo-Mir-36 Sme-Mir-36-P20 Tca-Mir-36

Node of Origin (locus)

C. briggsae

Node of Origin (family)

Protostomia

Genome context
(CB4)

II: 8377669-8377736 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-36-o20)

Mir-36-o19 II: 8377574-8377633 [+] Ensembl
Mir-36-o20 II: 8377669-8377736 [+] Ensembl
Mir-36-o21 II: 8377847-8377908 [+] Ensembl
Mir-36-o22 II: 8377946-8378013 [+] Ensembl
Mir-36-o24 II: 8378068-8378133 [+] Ensembl
Mir-36-o13 II: 8378188-8378247 [+] Ensembl
Mir-36-o23 II: 8378304-8378369 [+] Ensembl
Mir-36-o1 II: 8378426-8378486 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GAUGGGUAUUCAUGUGGAGCCUGGACCUGUACCGGGUUCUCUUUGUGGUGAUAUGACAACUCAUAACCAUUCCUUAUCACCGGGAGACAACCUGGUAUAGGUCCAGCGACUCUGCUGGAUGGUCCCGU

Get precursor sequence

Structure

        10           20        30        40        50        60    
GAUGGGUAUUCAUGUGGA---| C                 C     G        UGACAACUCA 
                     GC UGGACCUGUACCGGGUU UCUUU UGGUGAUA          \
                     CG ACCUGGAUAUGGUCCAA AGAGG GCCACUAU          U
UGCCCUGGUAGGUCGUCUCAG^ -                 C     -        UCCUUACCAA 
      120       110        100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

01	02	03	04	05	06	07	08	09	10	11	12	13	14	15	16	Cb	Ea	Ma	Yo

Mature sequence

Cbr-Mir-36-o20_5p

mirBase accession

None

Sequence

0- ACCGGGUUCUCUUUGUGGUGAUA -23

Get sequence

Star sequence

Cbr-Mir-36-o20_3p*

mirBase accession

MIMAT0001315

Sequence

46- UCACCGGGAGACAACCUGGUAU -68

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