MirGeneDB 2.1

MirGeneDB ID

Dya-Mir-2-P4a-v1

Family name MIR-2 (all species)
Seed AUCACAG
Species Fruit fly (Drosophila yakuba)
MiRBase ID dya-mir-2a-1
Paralogues Dya-Mir-2-P1-v1  Dya-Mir-2-P1-v2  Dya-Mir-2-P2a  Dya-Mir-2-P2b1  Dya-Mir-2-P2b2  Dya-Mir-2-P3a  Dya-Mir-2-P3b  Dya-Mir-2-P4a-v2  Dya-Mir-2-P4b-v1  Dya-Mir-2-P4b-v2  Dya-Mir-2-P5  Dya-Mir-2-P6a  Dya-Mir-2-P6b  Dya-Mir-2-P6c  Dya-Mir-2-P7  Dya-Mir-2-P8  Dya-Mir-2-P9-v1  Dya-Mir-2-P9-v2 
Orthologues Aae-Mir-2-P4-v1  Aae-Mir-2-P4-v2  Cbr-Mir-2-o4  Cel-Mir-2-o4  Dan-Mir-2-P4a-v1  Dan-Mir-2-P4a-v2  Dma-Mir-2-P4  Dme-Mir-2-P4a-v1  Dme-Mir-2-P4a-v2  Dmo-Mir-2-P4a-v1  Dmo-Mir-2-P4a-v2  Dpu-Mir-2-P4  Dsi-Mir-2-P4a-v1  Dsi-Mir-2-P4a-v2  Hme-Mir-2-P4  Isc-Mir-2-P4  Tca-Mir-2-P4-v1  Tca-Mir-2-P4-v2 
Node of Origin (locus) Drosophila
Node of Origin (family) Protostomia
Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)
2R: 6066959-6067024 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P4a-v1)
Mir-2-P4b-v1 2R: 6066569-6066628 [-] UCSC Ensembl
Mir-2-P4b-v2 2R: 6066569-6066628 [-] UCSC Ensembl
Mir-2-P4a-v1 2R: 6066959-6067024 [-] UCSC Ensembl
Mir-2-P4a-v2 2R: 6066959-6067024 [-] UCSC Ensembl
Mir-2-P3b 2R: 6067230-6067298 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAUAAAACUAUUGGCGCAUUCACGCUGGGCUCUCAAAGUGGUUGUGAAAUGCAUUUCCGCUUUGCGCGGCAUAUCACAGCCAGCUUUGAUGAGCUUAGCGUAAUGUAUCGUACAUCAAAUCAUGG
Get precursor sequence
Structure
        10           20        30          40        50        60 
CAAUAAAACUAUUGGCG---    C           -      -|        A   CAUUUCCG 
                    CAUU ACGCUGGGCUC UCAAAG UGGUUGUGA AUG        C
                    GUAA UGCGAUUCGAG AGUUUC ACCGACACU UAC        U
GGUACUAAACUACAUGCUAU    -           U      G^        A   GGCGCGUU 
    120       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Wh
Star sequence

Dya-Mir-2-P4a-v1_5p*

mirBase accessionNone
Sequence
0- CUCUCAAAGUGGUUGUGAAAUG -22
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Mature sequence

Dya-Mir-2-P4a-v1_3p

mirBase accessionMIMAT0009106
Sequence
42- UAUCACAGCCAGCUUUGAUGAGCU -66
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