MirGeneDB 3.0
130 Drosophila yakuba microRNA genes
Sort by genome coordinates Motifs Tissue expression
- +
MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC He Wh
Dya-Bantam dya-bantam BANTAM GAGAUCA None MIMAT0009057 3L 629668 629727 + Protostomia Protostomia No
Dya-Iab-4 dya-mir-iab-4 IAB-4 CGUAUAC MIMAT0009089 MIMAT0009090 3R 11708973 11709029 - Arthropoda Arthropoda No 1 1
Dya-Iab-4-as None IAB-4 UACGUAU None None 3R 11708973 11709032 + Pancrustacea Arthropoda No 1
Dya-Let-7 dya-let-7 LET-7 GAGGUAG MIMAT0009098 None 2R 4988844 4988903 + Bilateria Bilateria No 1
Dya-Mir-1 dya-mir-1 MIR-1 GGAAUGU None MIMAT0009083 2R 6842741 6842801 + Bilateria Bilateria No 1
Dya-Mir-2-P1 V dya-mir-2c MIR-2 CACAGCC None MIMAT0009097 3R 15188380 15188446 + Arthropoda Protostomia 2 No
Dya-Mir-2-P2a dya-mir-13a MIR-2 AUCACAG None MIMAT0009093 3R 15188599 15188661 + Neoptera Protostomia No 1
Dya-Mir-2-P2b1 dya-mir-13b-1 MIR-2 AUCACAG None MIMAT0009056 3R 15188742 15188801 + Drosophila Protostomia No 1
Dya-Mir-2-P2b2 dya-mir-13b-2 MIR-2 AUCACAG None MIMAT0009056 X 12330569 12330629 - Drosophila Protostomia No 1 1
Dya-Mir-2-P3a dya-mir-2b-1 MIR-2 AUCACAG None MIMAT0009075 2L 10894252 10894314 - Glossinidae + Drosophilidae Protostomia No 1 1
Dya-Mir-2-P3b dya-mir-2b-2 MIR-2 AUCACAG None MIMAT0009075 2R 6067230 6067298 - Glossinidae + Drosophilidae Protostomia No
Dya-Mir-2-P4a V dya-mir-2a-1 MIR-2 AUCACAG None MIMAT0009106 2R 6066959 6067024 - Glossinidae + Drosophilidae Protostomia 2 No 1
Dya-Mir-2-P4b V dya-mir-2a-2 MIR-2 AUCACAG None MIMAT0009106 2R 6066569 6066628 - Glossinidae + Drosophilidae Protostomia 2 No
Dya-Mir-2-P5 dya-mir-5 MIR-2 AAGGAAC MIMAT0009101 None 2R 13624064 13624124 + Pancrustacea Protostomia No 1
Dya-Mir-2-P6a dya-mir-6-1 MIR-2 AUCACAG None MIMAT0009078 2R 13624211 13624273 + Drosophila Protostomia No 1
Dya-Mir-2-P6b dya-mir-6-2 MIR-2 AUCACAG None MIMAT0009078 2R 13624349 13624410 + Drosophila Protostomia No 1
Dya-Mir-2-P6c dya-mir-6-3 MIR-2 AUCACAG None MIMAT0009078 2R 13624497 13624562 + Drosophila Protostomia No 1
Dya-Mir-2-P7 dya-mir-11 MIR-2 AUCACAG None MIMAT0009123 3R 6285780 6285840 - Neoptera Protostomia No 1
Dya-Mir-2-P8 dya-mir-308 MIR-2 AUCACAG None MIMAT0009100 2R 10041147 10041207 - Aparaglossata Protostomia No 1
Dya-Mir-2-P9 V None MIR-2 UAAGGAA None None 3R 10262385 10262453 + Glossinidae + Drosophilidae Protostomia 2 No
Dya-Mir-3-P1 dya-mir-309 MIR-3 CACUGGG None MIMAT0009085 2R 13623513 13623571 + Drosophila Pancrustacea No
Dya-Mir-3-P2 dya-mir-3 MIR-3 CACUGGG None MIMAT0009074 2R 13623628 13623684 + Drosophila Pancrustacea No 1
Dya-Mir-3-P3 dya-mir-318 MIR-3 CACUGGG None MIMAT0009079 3R 10262545 10262602 + Drosophila Pancrustacea No 1
Dya-Mir-7 dya-mir-7 MIR-7 GGAAGAC MIMAT0009119 None 2R 12702754 12702815 - Bilateria Bilateria No 1
Dya-Mir-8 dya-mir-8 MIR-8 AAUACUG None MIMAT0009066 2R 16257245 16257304 - Nephrozoa Nephrozoa No 1
Dya-Mir-9-P9 dya-mir-4 MIR-9 UAAAGCU None MIMAT0009058 2R 13623927 13623983 + Pancrustacea Bilateria No 1
Dya-Mir-9-P10 dya-mir-9a MIR-9 CUUUGGU MIMAT0009070 None 3L 20989425 20989485 - Pancrustacea Bilateria No 1 1
Dya-Mir-9-P11 dya-mir-9c MIR-9 CUUUGGU MIMAT0009112 None 2R 4405087 4405156 - Neoptera Bilateria No 1
Dya-Mir-9-P12 V dya-mir-79 MIR-9 AAAGCUA None MIMAT0009124 2R 4404435 4404497 - Neoptera Bilateria 2 No
Dya-Mir-9-P13 dya-mir-9b MIR-9 CUUUGGU MIMAT0009113 None 2R 4404254 4404316 - Neoptera Bilateria No 1 1
Dya-Mir-10-P1 dya-mir-10 MIR-10 CCCUGUA MIMAT0009082 None 3R 7778013 7778075 + Bilateria Eumetazoa No 1
Dya-Mir-10-P2 dya-mir-100 MIR-10 ACCCGUA MIMAT0009059 None 2R 4988231 4988291 + Bilateria Eumetazoa No
Dya-Mir-10-P3 dya-mir-125 MIR-10 CCCUGAG MIMAT0009096 None 2R 4989142 4989201 + Bilateria Eumetazoa No
Dya-Mir-10-P4 None MIR-10 AAGCUCG None None 3R 7811379 7811470 - Protostomia Eumetazoa No 1
Dya-Mir-14 dya-mir-14 MIR-14 CAGUCUU None MIMAT0009076 2L 18072285 18072343 + Neoptera Neoptera No 1 1
Dya-Mir-22-P2 None MIR-22 AGCUGCC None None X 117086 117152 - Bilateria Bilateria No 1
Dya-Mir-29-P1 dya-mir-285 MIR-29 AGCACCA None MIMAT0009088 3L 11984802 11984875 - Bilateria Bilateria No 1
Dya-Mir-29-P2g None MIR-29 AGCACCA None None 3R 5351078 5351137 + Neoptera Bilateria No 1
Dya-Mir-29-P2h None MIR-29 AGCACCA None None 3R 6285189 6285285 - Neoptera Bilateria No
Dya-Mir-31-P1 dya-mir-31a MIR-31 GGCAAGA MIMAT0009103 None 2R 15512035 15512102 + Glossinidae + Drosophilidae Bilateria No 1
Dya-Mir-31-P2 dya-mir-31b MIR-31 GGCAAGA MIMAT0009104 None X 12425708 12425809 + Glossinidae + Drosophilidae Bilateria No
Dya-Mir-33 dya-mir-33 MIR-33 UGCAUUG MIMAT0009063 None 3L 20771343 20771403 - Bilateria Bilateria No 1 1
Dya-Mir-34 dya-mir-34 MIR-34 GGCAGUG MIMAT0009081 None 3R 9974485 9974558 + Bilateria Bilateria No
Dya-Mir-67 V dya-mir-307 MIR-67 CACAACC None MIMAT0009054 2L 18140656 18140721 - Protostomia Protostomia 3 No 1
Dya-Mir-76 None MIR-76 UCGUUGU None None X 1528093 1528156 - Nephrozoa Nephrozoa No 1
Dya-Mir-87-P2 V dya-mir-87 MIR-87 UGAGCAA None MIMAT0009053 2L 12640997 12641068 - Protostomia Protostomia 2 No 1
Dya-Mir-92-P3 dya-mir-92a MIR-92 AUUGCAC None MIMAT0009111 3R 25001394 25001453 - Pancrustacea Bilateria No 1
Dya-Mir-92-P4 dya-mir-92b MIR-92 AUUGCAC None MIMAT0009120 3R 24996479 24996541 - Pancrustacea Bilateria No 1
Dya-Mir-92-P5 dya-mir-310 MIR-92 AUUGCAC MIMAT0037350 MIMAT0009092 2R 12724949 12725008 + Drosophila Bilateria No 1
Dya-Mir-92-P6a dya-mir-311b MIR-92 AUUGCAC MIMAT0037352 MIMAT0009116 2R 12724560 12724622 + D. yakuba Bilateria No 1 1
Dya-Mir-92-P6b dya-mir-311a MIR-92 AUUGCAC MIMAT0037349 MIMAT0009091 2R 12724839 12724897 + D. yakuba Bilateria No 1
Dya-Mir-92-P7 dya-mir-312 MIR-92 AUUGCAC MIMAT0037351 MIMAT0009108 2R 12724704 12724764 + Drosophila Bilateria No
Dya-Mir-96-P2 dya-mir-263b MIR-96 UUGGCAC MIMAT0009110 None 3L 18445413 18445473 - Bilateria Bilateria No 1
Dya-Mir-96-P3 dya-mir-263a MIR-96 AUGGCAC MIMAT0009114 None 2L 8374846 8374908 - Bilateria Bilateria No 1
Dya-Mir-124 dya-mir-124 MIR-124 AAGGCAC None MIMAT0009105 2R 3533202 3533257 - Bilateria Bilateria No
Dya-Mir-133 dya-mir-133 MIR-133 UGGUCCC None MIMAT0009072 2R 6964826 6964886 + Bilateria Bilateria No 1
Dya-Mir-137 None MIR-137 AUUGCUU None None 2R 17032236 17032294 + Bilateria Bilateria No 1
Dya-Mir-184 dya-mir-184 MIR-184 GGACGGA MIMAT0009121 MIMAT0009122 2R 7742283 7742342 + Nephrozoa Nephrozoa No 1
Dya-Mir-190 None MIR-190 GAUAUGU None None 3L 3348687 3348749 - Bilateria Bilateria No 1
Dya-Mir-193-P1 V None MIR-193 GUUGGGA None None 3L 18945624 18945704 - Bilateria Bilateria 4 No
Dya-Mir-210 V dya-mir-210 MIR-210 UGUGCGU None MIMAT0009095 X 16646342 16646400 + Bilateria Bilateria 2 No
Dya-Mir-216-P1 dya-mir-283 MIR-216 AAUAUCA MIMAT0009064 None X 9587625 9587693 + Nephrozoa Nephrozoa No
Dya-Mir-216-P2 dya-mir-304 MIR-216 AAUCUCA MIMAT0009073 None X 9589360 9589427 + Nephrozoa Nephrozoa No 1
Dya-Mir-219 dya-mir-219 MIR-219 GAUUGUC MIMAT0009107 None 3L 16762607 16762668 - Bilateria Bilateria No 1
Dya-Mir-252-P1a None MIR-252 AAGUAGU None None 2L 10160080 10160142 - Drosophila Bilateria No 1
Dya-Mir-252-P1b None MIR-252 UAAGUAG None None 2L 10159939 10160000 - Drosophila Bilateria No 1
Dya-Mir-252-P2 V None MIR-252 UAAGUAC None None 3R 13598032 13598098 - Bilateria Bilateria 2 No 1
Dya-Mir-275 dya-mir-275 MIR-275 CAGGUAC None MIMAT0009115 2L 5473800 5473861 - Arthropoda Arthropoda No 1
Dya-Mir-276-P1 dya-mir-276b MIR-276 AGGAACU None MIMAT0009125 3L 10302168 10302225 + Diptera Arthropoda No 1
Dya-Mir-276-P2 dya-mir-276a MIR-276 AGGAACU None MIMAT0009117 3L 10348902 10348960 + Diptera Arthropoda No 1 1
Dya-Mir-277 dya-mir-277 MIR-277 AAAUGCA None MIMAT0009099 3R 9973491 9973554 + Protostomia Protostomia No 1
Dya-Mir-278 dya-mir-278 MIR-278 CGGUGGG None MIMAT0009086 2R 17445996 17446056 - Bilateria Bilateria No 1
Dya-Mir-279-P1 dya-mir-286 MIR-279 GACUAGA None MIMAT0009109 2R 13623775 13623848 + Pancrustacea Protostomia No 1
Dya-Mir-279-P2 dya-mir-279 MIR-279 GACUAGA None MIMAT0009062 3R 21456064 21456130 - Pancrustacea Protostomia No 1
Dya-Mir-279-P3 None MIR-279 GACUAGA None None 3R 21454444 21454507 - Pancrustacea Protostomia No 1 1
Dya-Mir-281-P1 V dya-mir-281-1 MIR-281 GUCAUGG MIMAT0009060 MIMAT0009061 2R 8893361 8893427 + Drosophila Nephrozoa 2 No
Dya-Mir-281-P2 V None MIR-281 AGAGAGC None None 2R 8893568 8893634 + Drosophila Nephrozoa 2 No 1
Dya-Mir-282 dya-mir-282 MIR-282 AGCCUCU MIMAT0009071 None 3L 3795955 3796019 + Pancrustacea Pancrustacea No 1
Dya-Mir-284 dya-mir-284 MIR-284 CUGGAAU None MIMAT0009087 3R 12662254 12662333 - Glossinidae + Drosophilidae Glossinidae + Drosophilidae No 1
Dya-Mir-303 None MIR-303 AUUUACC None None X 4177759 4177818 + D. melanogaster subgroup D. melanogaster subgroup No 1
Dya-Mir-305 dya-mir-305 MIR-305 UUGUACU MIMAT0009067 None 2L 5473634 5473694 - Cryptovermes Cryptovermes No 1 1
Dya-Mir-306 None MIR-306 CAGGUAC None None 2R 4404575 4404633 - Neoptera Neoptera No 1
Dya-Mir-314 dya-mir-314 MIR-314 AUUCGAG None MIMAT0009077 3L 11794919 11795006 + Drosophila Drosophila Yes
Dya-Mir-315 dya-mir-315 MIR-315 UUUGAUU MIMAT0009084 None 3L 21787038 21787101 - Nephrozoa Nephrozoa No 1
Dya-Mir-316 dya-mir-316 MIR-316 GUCUUUU MIMAT0009080 None 3L 18849525 18849584 + Pancrustacea Pancrustacea No 1
Dya-Mir-317 dya-mir-317 MIR-317 GAACACA None MIMAT0009055 3R 9963987 9964052 + Protostomia Protostomia No
Dya-Mir-375 None MIR-375 UUGUUCG None None 2L 841581 841640 + Nephrozoa Nephrozoa No 1
Dya-Mir-927-P1 None MIR-927 UUAGAAU None None X 10049126 10049187 - Neoptera Neoptera No
Dya-Mir-929 None MIR-929 AAUUGAC None None 3R 481120 481176 + Neoptera Neoptera No 1
Dya-Mir-932 None MIR-932 CAAUUCC None None 2L 6007749 6007809 - Neoptera Neoptera No 1 1 1
Dya-Mir-955 None MIR-955 AUCGUGC None None 3L 3844770 3844832 + Drosophila Drosophila No 1
Dya-Mir-956 V None MIR-956 UUCGAGA None None 3L 11795685 11795813 - Glossinidae + Drosophilidae Glossinidae + Drosophilidae 2 No
Dya-Mir-957-P1 None MIR-957 GAAACCG None None 3L 22973881 22973948 - D. yakuba Diptera No 1 1 1
Dya-Mir-957-P2 None MIR-957 GAAACCG None None 3L 22972000 22972067 - D. yakuba Diptera No 1 1 1
Dya-Mir-959 V None MIR-959 UGUCAUC None None 2L 13552286 13552348 - D. melanogaster group D. melanogaster group 2 No 1
Dya-Mir-960 None MIR-960 GAGUAUU None None 2L 13552167 13552226 - Drosophila Drosophila No
Dya-Mir-961 None MIR-961 UUGAUCA None None 2L 13552048 13552106 - D. melanogaster group D. melanogaster group Unknown 1 1
Dya-Mir-962 None MIR-962 UAAGGUA None None 2L 13551941 13552000 - Drosophila Drosophila Unknown 1
Dya-Mir-963 None MIR-963 CAUCUGU None None 2L 13551212 13551277 - Drosophila Drosophila No 1
Dya-Mir-964 V None MIR-964 UAGAAUA None None 2L 13551083 13551143 - Drosophila Drosophila 2 No 1 1
Dya-Mir-965 None MIR-965 AAGCGUA None None 2L 236075 236137 - Pancrustacea Pancrustacea No 1
Dya-Mir-966 None MIR-966 GUGGGAU None None 2L 13146739 13146794 + D. melanogaster subgroup D. melanogaster subgroup Unknown 1
Dya-Mir-967 None MIR-967 GAUGAUA None None 2L 8897108 8897182 - D. melanogaster subgroup D. melanogaster subgroup Unknown
Dya-Mir-969 None MIR-969 AGUUCCA None None X 16642342 16642403 + Drosophila Drosophila No 1
Dya-Mir-970 None MIR-970 CAUAAGA None None X 6807175 6807239 + Aparaglossata Aparaglossata No 1
Dya-Mir-971 None MIR-971 UGGUGUU None None X 7229804 7229865 + Neoptera Neoptera No
Dya-Mir-975 dya-mir-975 MIR-975 UAAACAC MIMAT0039177 MIMAT0039178 X 11885984 11886046 - Drosophila Drosophila Unknown 1 1
Dya-Mir-976 dya-mir-976 MIR-976 UGGAUUA MIMAT0039182 MIMAT0039183 X 11885829 11885886 - Drosophila Drosophila No 1 1
Dya-Mir-977 dya-mir-977 MIR-977 GAGAUAU MIMAT0039186 MIMAT0039187 X 11885660 11885723 - Drosophila Drosophila No
Dya-Mir-978 dya-mir-978 MIR-978 UGUCCAG MIMAT0039179 MIMAT0039180 X 11883774 11883834 - D. melanogaster group D. melanogaster group No 1
Dya-Mir-986 None MIR-986 CUCGAAU None None 2L 16988581 16988648 + D. melanogaster group D. melanogaster group No 1
Dya-Mir-987 None MIR-987 AAAGUAA None None 2L 17856082 17856147 - Glossinidae + Drosophilidae Glossinidae + Drosophilidae No 1
Dya-Mir-988 None MIR-988 CCCUUGU None None 2R 8904878 8904935 + Panorpida Panorpida No 1
Dya-Mir-989 None MIR-989 GUGAUGU None None 2R 9968940 9969082 - Endopterygota Endopterygota No 1
Dya-Mir-991 dya-mir-991 MIR-991 UAAAGCC MIMAT0039170 MIMAT0039171 2R 12723801 12723862 + D. melanogaster subgroup D. melanogaster subgroup No 1
Dya-Mir-992 dya-mir-992 MIR-992 AGUAUCA MIMAT0039164 MIMAT0039165 2R 12723689 12723744 + D. melanogaster subgroup D. melanogaster subgroup No 1
Dya-Mir-999 None MIR-999 GUUAACU None None 3R 18443963 18444022 - Diptera Diptera No 1 1
Dya-Mir-1000 None MIR-1000 UAUUGUC None None 3R 25064567 25064633 + Neoptera Neoptera No 1
Dya-Mir-1001 None MIR-1001 GGGUAAA None None 3R 23018709 23018769 + D. melanogaster subgroup D. melanogaster subgroup Unknown 1 1
Dya-Mir-1003 None MIR-1003 CUCACAU None None 3R 26013217 26013272 - Drosophila Drosophila No
Dya-Mir-1006 None MIR-1006 AAAUUCG None None 2R 4378147 4378210 + Drosophila Drosophila Yes 1
Dya-Mir-1007 None MIR-1007 AAGCUCA None None X 20343136 20343200 - D. melanogaster group D. melanogaster group Yes
Dya-Mir-1010 None MIR-1010 UUCACCU None None 3R 18962302 18962376 + Drosophila Drosophila Yes
Dya-Mir-1175-P3 None MIR-1175 GAGAUUC None None 3L 23128670 23128733 - D. yakuba Protostomia No 1 1
Dya-Mir-1175-P4 None MIR-1175 GAGAUUC None None 3L 23123731 23123794 - D. yakuba Protostomia No 1 1
Dya-Mir-2001 None MIR-2001 UUGUGAC None None 3L 11678655 11678720 + Bilateria Bilateria No 1
Dya-Mir-4969 None MIR-4969 GGUAAAU None None 3R 18444241 18444357 - D. melanogaster subgroup D. melanogaster subgroup No 1
Dya-Mir-9681 dya-mir-9681 MIR-9681 UUCGGAC MIMAT0039168 MIMAT0039169 2R 12724136 12724190 + D. yakuba D. yakuba No 1
Dya-Mir-9682 dya-mir-9682 MIR-9682 UCACUGG MIMAT0039172 MIMAT0039173 X 4178218 4178276 + D. yakuba D. yakuba No
Dya-Mir-9690 dya-mir-9690 MIR-9690 AUACGAA MIMAT0039184 MIMAT0039185 X 11886163 11886224 - D. yakuba D. yakuba No

(red - mature/co-mature, blue - star)

Download sequences for: precursor | 5p | 3p | mature | star | mature/star | loop | extend_pre | all

Download genome coordinates (GFF format)

Download count matrix