MirGeneDB ID | Dya-Mir-9-P10 |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Fruit fly (Drosophila yakuba) |
MiRBase ID |
dya-mir-9a
|
Paralogues |
Dya-Mir-9-P9
Dya-Mir-9-P11
Dya-Mir-9-P12-v1
Dya-Mir-9-P12-v2
Dya-Mir-9-P13
|
Orthologues |
Aae-Mir-9-P10a
Aae-Mir-9-P10b
Bfl-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cin-Mir-9
Cte-Mir-9
Dan-Mir-9-P10
Dme-Mir-9-P10
Dmo-Mir-9-P10
Dsi-Mir-9-P10
Esc-Mir-9
Isc-Mir-9
Lan-Mir-9
Lgi-Mir-9
Npo-Mir-9
Obi-Mir-9
Ovu-Mir-9
Pmi-Mir-9
Spu-Mir-9
Tca-Mir-9-o10-v1
Tca-Mir-9-o10-v2
Xbo-Mir-9
|
Node of Origin (locus) |
Diptera
|
Node of Origin (family) |
Bilateria
|
Genome context (Drosophila_yakuba.dyak_caf1.dna.toplevel) |
3L: 20989425-20989485 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACAACCGACUCUAUACAGGGUGCUAUGUUGUCUUUGGUUAUCUAGCUGUAUGAGUGAUAAAUAACGUCAUAAAGCUAGCUUACCGAAGUUAAUAUUAGCGUCUGACCAGCGAAACUGCCAA
Get precursor sequence
|
Structure | 10 20 30 40 50
ACAACCGACUCUAUACA- GU -| U UAU G GUGAUA
GG GCU AUGUUG CUUUGGU CUAGCU UAUGA \
UC CGA UAUAAU GAAGCCA GAUCGA AUACU A
AACCGUCAAAGCGACCAG UG U^ U UUC A GCAAUA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Dya-Mir-9-P10_5p |
mirBase accession | MIMAT0009070 |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Star sequence |
Dya-Mir-9-P10_3p* |
mirBase accession | None |
Sequence |
38- AUAAAGCUAGCUUACCGAAGUUA -61
Get sequence
|