Mir-9-P12-v1

MirGeneDB ID

Dya-Mir-9-P12-v1

Family name

MIR-9 (all species)

Seed

AAAGCUA

Species

Fruit fly (Drosophila yakuba)

MiRBase ID

dya-mir-79

Paralogues

Dya-Mir-9-P9 Dya-Mir-9-P10 Dya-Mir-9-P11 Dya-Mir-9-P12-v2 Dya-Mir-9-P13

Orthologues

Aae-Mir-9-P12-v1 Aae-Mir-9-P12-v2 Bfl-Mir-9 Bge-Mir-9-o12 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cte-Mir-9 Dan-Mir-9-P12-v1 Dan-Mir-9-P12-v2 Dme-Mir-9-P12-v1 Dme-Mir-9-P12-v2 Dmo-Mir-9-P12-v1 Dmo-Mir-9-P12-v2 Dsi-Mir-9-P12-v1 Dsi-Mir-9-P12-v2 Esc-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Npo-Mir-9 Obi-Mir-9 Ovu-Mir-9 Pmi-Mir-9 Spu-Mir-9 Xbo-Mir-9

Node of Origin (locus)

Diptera

Node of Origin (family)

Bilateria

Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)

2R: 4404435-4404497 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-9-P12-v1)

Mir-9-P13 2R: 4404254-4404316 [-] UCSC Ensembl
Mir-9-P12-v1 2R: 4404435-4404497 [-] UCSC Ensembl
Mir-9-P12-v2 2R: 4404435-4404497 [-] UCSC Ensembl
Mir-9-P11 2R: 4405087-4405156 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGAAUUGAGAGUGUAGCUGCCUUGCCAUUGCUUUGGCGCUUUAGCUGUAUGAUAGAUUUAUACUACUUCAUAAAGCUAGAUUACCAAAGCAUUGGCUUCUGCAGAUCAAUCAUCAGACAAAU

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Structure

        10         20         30        40        50        60 
GUGAAUUGAGAGUGUAG-    CUU-|   U        CGC       G    AUAGAUUU 
                  CUGC    GCCA UGCUUUGG   UUUAGCU UAUG        \
                  GACG    CGGU ACGAAACC   AGAUCGA AUAC        A
UAAACAGACUACUAACUA    UCUU^   U        AUU       A    UUCAUCAU 
 120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

Tissue expression

He	Wh

Star sequence

Dya-Mir-9-P12-v1_5p*

mirBase accession

None

Sequence

0- GCUUUGGCGCUUUAGCUGUAUG -22

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Mature sequence

Dya-Mir-9-P12-v1_3p

mirBase accession

MIMAT0009124

Sequence

41- UAAAGCUAGAUUACCAAAGCAU -63

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