MirGeneDB 3.0
MirGeneDB ID

Aae-Mir-9-P12

Family name MIR-9 (all species)
Species Yellow fever mosquito (Aedes aegypti)
MiRBase ID aae-mir-79
Paralogues Aae-Mir-9-P10a  Aae-Mir-9-P10b  Aae-Mir-9-P11  Aae-Mir-9-P13 
Orthologues Aga-Mir-9-P12  Agr-Mir-9  Bfl-Mir-9  Bge-Mir-9-P12-v1  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dan-Mir-9-P12-v1  Dgr-Mir-9  Dlo-Mir-9-P12-v1  Dme-Mir-9-P12-v1  Dmo-Mir-9-P12-v1  Dsi-Mir-9-P12-v1  Dya-Mir-9-P12-v1  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gpa-Mir-9-P12-v1  Gsa-Mir-9  Gsp-Mir-9  Hme-Mir-9-P12  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  Tca-Mir-9-P12  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Neoptera
Node of Origin (family) Bilateria
Genome context
(Aaeg_L3)		 supercont1.785: 213277-213338 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P12-v1)		 Mir-9-P11 supercont1.785: 186231-186302 [+] Ensembl
Mir-306 supercont1.785: 213078-213173 [+] Ensembl
Mir-9-P12-v1 supercont1.785: 213277-213338 [+] Ensembl
Mir-9-P12-v2 supercont1.785: 213278-213337 [+] Ensembl
Mir-9-P13 supercont1.785: 213584-213648 [+] Ensembl
Variant

Aae-Mir-9-P12-v1
Seed AAAGCUA
Precursor
(pre-Mir +30nt flank)		 
CAGAAUGAGAAAACGGAACCCAUCGUCCAUGCUUUGGCGCUUUAGCUGUAUGAUAGAAUUUAAUAUUUCAUAAAGCUAGAUUACCAAAGCAUGGAAGGCUUGGGCGGUGUCGUCCCUCUAAC
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Structure
        10        20          30        40        50        60
CAGAAUGAGAAAACGGAA    UCG--|           CGC       G    AUAGAAU 
                  CCCA     UCCAUGCUUUGG   UUUAGCU UAUG       U
                  GGGU     AGGUACGAAACC   AGAUCGA AUAC       U
CAAUCUCCCUGCUGUGGC    UCGGA^           AUU       A    UUUAUAA 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Ge Ge So So To To To
Star sequence

Aae-Mir-9-P12-v1_5p*
mirBase accessionMIMAT0014294
Sequence 
0- GCUUUGGCGCUUUAGCUGUAUG -22
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Mature sequence

Aae-Mir-9-P12-v1_3p
mirBase accessionMIMAT0014295
Sequence 
40- UAAAGCUAGAUUACCAAAGCAU -62
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Variant

Aae-Mir-9-P12-v2
Seed UAAAGCU
Precursor
(pre-Mir +30nt flank)		 
AGAAUGAGAAAACGGAACCCAUCGUCCAUGCUUUGGCGCUUUAGCUGUAUGAUAGAAUUUAAUAUUUCAUAAAGCUAGAUUACCAAAGCAUGGAAGGCUUGGGCGGUGUCGUCCCUCUAA
Get precursor sequence
Structure
        10        20          30        40        50         
AGAAUGAGAAAACGGAAC   UCG--|           CGC       G     UAGAAU 
                  CCA     UCCAUGCUUUGG   UUUAGCU UAUGA      U
                  GGU     AGGUACGAAACC   AGAUCGA AUACU      U
AAUCUCCCUGCUGUGGCG   UCGGA^           AUU       A     UUAUAA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Ge Ge So So To To To
Star sequence

Aae-Mir-9-P12-v2_5p*
mirBase accessionMIMAT0014294
Sequence 
0- CUUUGGCGCUUUAGCUGUAUGA -22
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Mature sequence

Aae-Mir-9-P12-v2_3p
mirBase accessionMIMAT0014295
Sequence 
38- AUAAAGCUAGAUUACCAAAGCA -60
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