MirGeneDB 3.0
MirGeneDB ID

Aae-Mir-306

Family name MIR-306 (all species)
Species Yellow fever mosquito (Aedes aegypti)
MiRBase ID aae-mir-306
Paralogues
Orthologues Aga-Mir-306  Bge-Mir-306  Dan-Mir-306  Dlo-Mir-306  Dme-Mir-306  Dmo-Mir-306  Dsi-Mir-306  Dya-Mir-306  Gpa-Mir-306  Hme-Mir-306 
Node of Origin (locus) Neoptera
Node of Origin (family) Neoptera
Genome context
(Aaeg_L3)		 supercont1.785: 213078-213173 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-306)		 Mir-9-P11 supercont1.785: 186231-186302 [+] Ensembl
Mir-306 supercont1.785: 213078-213173 [+] Ensembl
Mir-9-P12-v1 supercont1.785: 213277-213338 [+] Ensembl
Mir-9-P12-v2 supercont1.785: 213278-213337 [+] Ensembl
Mir-9-P13 supercont1.785: 213584-213648 [+] Ensembl
Seed CAGGUAC
Precursor
(pre-Mir +30nt flank)		 
ACCCAACAGAACAUUCGCAAUUUCACCGGUUCAGGUACUGAGUGACUCUCAGAUGUGCAUUUCUCAAGCAAUCUCGUCCUCAGGACCUGAGGUUGAAAAACCCUGAGAGCACCUCGGUAUCUAAGCCAGUGUUGCGAAAAUGCCAACAUCAGAGUG
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Structure
        10        20          30        40         50        60        70       
ACCCAACAGAACAUUCGCAAUUU--   C    C         -|  A       AUGUGCAUUUCUCAAGCAAUCUCG 
                         CAC GGUU AGGUACUGA GUG CUCUCAG                        U
                         GUG CCGA UCUAUGGCU CAC GAGAGUC                        C
GUGAGACUACAACCGUAAAAGCGUU   A    A         C^  -       CCAAAAAGUUGGAGUCCAGGACUC 
    150       140       130       120       110        100        90        80
Deep sequencing
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CommentThere are Dicer cuts -1 and -2.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ge Ge So So To To To
Mature sequence

Aae-Mir-306_5p
mirBase accessionMIMAT0014229
Sequence 
0- UCAGGUACUGAGUGACUCUCAG -22
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Star sequence

Aae-Mir-306_3p*
mirBase accessionMIMAT0014230
Sequence 
74- GAGAGCACCUCGGUAUCUAAGC -96
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