Mir-306

MirGeneDB ID

Dme-Mir-306

Family name

MIR-306 (all species)

Species

Fruit fly (Drosophila melanogaster)

MiRBase ID

dme-mir-306

Paralogues

Orthologues

Aae-Mir-306 Aga-Mir-306 Bge-Mir-306 Dan-Mir-306 Dlo-Mir-306 Dmo-Mir-306 Dsi-Mir-306 Dya-Mir-306 Gpa-Mir-306 Hme-Mir-306

Node of Origin (locus)

Neoptera

Node of Origin (family)

Neoptera

Genome context
(Drosophila_melanogaster_BDGP6)

2L: 16698418-16698476 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-306)

Mir-9-P11 2L: 16697936-16698005 [+] UCSC Ensembl
Mir-306 2L: 16698418-16698476 [+] UCSC Ensembl
Mir-9-P12-v1 2L: 16698572-16698634 [+] UCSC Ensembl
Mir-9-P12-v2 2L: 16698572-16698634 [+] UCSC Ensembl
Mir-9-P13 2L: 16698758-16698820 [+] UCSC Ensembl
Mir-1006 2L: 16724795-16724858 [-] UCSC Ensembl

Seed

CAGGUAC

Precursor
(pre-Mir +30nt flank)

AGUGAAUAGUUUAAAAGUCCACUCGAUGGCUCAGGUACUUAGUGACUCUCAAUGCUUUUGACAUUUUGGGGGUCACUCUGUGCCUGUGCUGCCAGUGGGACAUAAUCUACAAAUAAAGU

Get precursor sequence

Structure

        10           20        30        40        50         
AGUGAAUAGUUUAAAAG---|     CGA    U       UU            UGCUUU 
                    UCCACU   UGGC CAGGUAC  AGUGACUCUCAA      \
                    GGGUGA   GUCG GUCCGUG  UCACUGGGGGUU      U
UGAAAUAAACAUCUAAUACA^     CC-    U       UC            UUACAG 
       110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	He	He	La	Ov	Sa	Wh

Mature sequence

Dme-Mir-306_5p

mirBase accession

MIMAT0000393

Sequence

0- UCAGGUACUUAGUGACUCUCAA -22

Get sequence

Proposed targets

microrna.org: MIMAT0000393
TargetScanFly: dme-miR-306

Star sequence

Dme-Mir-306_3p*

mirBase accession

MIMAT0000394

Sequence

37- GGGGGUCACUCUGUGCCUGUGC -59

Get sequence

Proposed targets

microrna.org: MIMAT0000394