MirGeneDB

116 microRNA genes with seed CUUUGGU
Sort by genome coordinates Motifs
MirGeneDB ID MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC
Cin-Mir-9 cin-mir-9 MIR-9 CUUUGGU MIMAT0016396 None 5 4897034 4897089 + Bilateria Bilateria No 1
Cte-Mir-9 cte-mir-9 MIR-9 CUUUGGU MIMAT0009508 MIMAT0009554 CAPTEscaffold_250 129678 129738 + Bilateria Bilateria Unknown 1
Isc-Mir-9 isc-mir-79 MIR-9 CUUUGGU None MIMAT0012705 DS885551 436513 436572 + Bilateria Bilateria No 1 1
Lan-Mir-9 None MIR-9 CUUUGGU None None LFEI01000577 180183 180243 + Bilateria Bilateria Unknown 1
Lgi-Mir-9 lgi-mir-9 MIR-9 CUUUGGU MIMAT0009562 MIMAT0009572 LOTGIsca_14 1751428 1751489 + Bilateria Bilateria No 1
Pmi-Mir-9 pmi-mir-9 MIR-9 CUUUGGU MIMAT0032142 None JH769648.1 36031 36093 + Bilateria Bilateria No 1
Spu-Mir-9 spu-mir-9 MIR-9 CUUUGGU MIMAT0009653 MIMAT0009661 Scaffold198 572011 572072 + Bilateria Bilateria No 1 1
Pfl-Mir-9-v1 None MIR-9 CUUUGGU None None LD344854.1 129993 130052 + Bilateria Bilateria No 1 1
Sko-Mir-9-v1 sko-mir-9 MIR-9 CUUUGGU MIMAT0009610 MIMAT0009618 NW_003125887.1 164505 164564 - Bilateria Bilateria No 1 1
Pfl-Mir-9-v2 None MIR-9 CUUUGGU None None LD344854.1 129993 130052 + Bilateria Bilateria No 1
Sko-Mir-9-v2 sko-mir-9 MIR-9 CUUUGGU MIMAT0009610 MIMAT0009618 NW_003125887.1 164505 164564 - Bilateria Bilateria No 1
Hme-Mir-9-o7 hme-mir-9a MIR-9 CUUUGGU None MIMAT0025003 HE669612 10319 10377 - H. melpomene Bilateria No 1
Hme-Mir-9-o8 hme-mir-9b MIR-9 CUUUGGU MIMAT0025002 None HE670875 766577 766635 + H. melpomene Bilateria No 1
Bge-Mir-9-o11 None MIR-9 CUUUGGU None None KZ614731.1 666805 666865 - B. germanica Bilateria No 1 1
Bge-Mir-9-o12-v1 None MIR-9 CUUUGGU None None KZ614731.1 668640 668700 - B. germanica Bilateria No 1
Bge-Mir-9-o13 None MIR-9 CUUUGGU None None KZ614731.1 672851 672910 - B. germanica Bilateria No 1
Bge-Mir-9-o14 None MIR-9 CUUUGGU None None KZ616519.1 74858 74917 + B. germanica Bilateria No 1 1 1
Dpu-Mir-9-o15 dpu-mir-9 MIR-9 CUUUGGU MIMAT0012671 None DAPPUscaffold_2 1526213 1526273 + D. pulex Bilateria No 1 1 1
Dpu-Mir-9-o16 None MIR-9 CUUUGGU None None DAPPUscaffold_32 69575 69633 - D. pulex Bilateria No 1
Asu-Mir-9-o17 asu-mir-9 MIR-9 CUUUGGU MIMAT0021431 MIMAT0021432 Scaffold703 302189 302252 + A. suum Bilateria No
Ami-Mir-9-P1 ami-mir-9-1 MIR-9 CUUUGGU MIMAT0038027 MIMAT0038028 JH734211 1059985 1060046 + Vertebrata Bilateria No 1 1
Bta-Mir-9-P1 None MIR-9 CUUUGGU None None chr3 14462440 14462501 + Vertebrata Bilateria No 1 1
Cfa-Mir-9-P1 cfa-mir-9-1 MIR-9 CUUUGGU MIMAT0006674 None chr7 41509404 41509464 + Vertebrata Bilateria No 1 1
Cli-Mir-9-P1 cli-mir-9-1 MIR-9 CUUUGGU MIMAT0038401 MIMAT0038402 scaffold404 120600 120660 - Vertebrata Bilateria No 1
Cpi-Mir-9-P1 cpi-mir-9-1 MIR-9 CUUUGGU MIMAT0037622 MIMAT0037623 JH584965 536050 536111 - Vertebrata Bilateria No 1 1
Cpo-Mir-9-P1 cpo-mir-9-1 MIR-9 CUUUGGU MIMAT0046843 MIMAT0046844 scaffold_10 16979679 16979739 - Vertebrata Bilateria No 1 1
Dno-Mir-9-P1 dno-mir-9-1 MIR-9 CUUUGGU MIMAT0047495 MIMAT0047496 JH579858 636262 636322 + Vertebrata Bilateria No 1 1
Dre-Mir-9-P1 dre-mir-9-1 MIR-9 CUUUGGU MIMAT0001769 MIMAT0003156 chr16 29216288 29216349 + Vertebrata Bilateria No 1 1
Ete-Mir-9-P1 None MIR-9 CUUUGGU None None JH980385 3055614 3055674 - Vertebrata Bilateria No 1 1
Gga-Mir-9-P1 gga-mir-9-4 MIR-9 CUUUGGU MIMAT0001195 MIMAT0048671 25 1538393 1538453 - Vertebrata Bilateria No 1
Hsa-Mir-9-P1 hsa-mir-9-1 MIR-9 CUUUGGU MIMAT0000441 MIMAT0000442 chr1 156420354 156420414 - Vertebrata Bilateria No 1 1
Mdo-Mir-9-P1 mdo-mir-9a-3 MIR-9 CUUUGGU MIMAT0004087 MIMAT0004088 2 191328853 191328914 - Vertebrata Bilateria No 1
Mml-Mir-9-P1 mml-mir-9-1 MIR-9 CUUUGGU MIMAT0006160 MIMAT0026796 chr1 131037371 131037431 - Vertebrata Bilateria No 1 1
Mmu-Mir-9-P1 mmu-mir-9-1 MIR-9 CUUUGGU MIMAT0000142 MIMAT0000143 chr3 88215613 88215673 + Vertebrata Bilateria No 1 1
Ocu-Mir-9-P1 ocu-mir-9-1 MIR-9 CUUUGGU MIMAT0048095 MIMAT0048096 chr13 36488233 36488293 + Vertebrata Bilateria No 1 1
Rno-Mir-9-P1 rno-mir-9a-1 MIR-9 CUUUGGU MIMAT0000781 MIMAT0004708 chr2 187582814 187582874 + Vertebrata Bilateria No 1 1
Sha-Mir-9-P1 None MIR-9 CUUUGGU None None GL856822.1 1577136 1577197 - Vertebrata Bilateria No 1
Xtr-Mir-9-P1 xtr-mir-9a-1 MIR-9 CUUUGGU MIMAT0003553 MIMAT0003554 KB021660 4935875 4935935 + Vertebrata Bilateria No 1
Oan-Mir-9-P1-v2 None MIR-9 CUUUGGU None None NC_041753.1 164722 164782 - Vertebrata Bilateria No 1
Aca-Mir-9-P2 aca-mir-9-1 MIR-9 CUUUGGU MIMAT0021990 MIMAT0021991 2 21613005 21613064 - Vertebrata Bilateria No 1 1
Ami-Mir-9-P2 ami-mir-9-2 MIR-9 CUUUGGU MIMAT0038027 MIMAT0038028 JH732968 273809 273868 + Vertebrata Bilateria No 1 1
Bta-Mir-9-P2 bta-mir-9-2 MIR-9 CUUUGGU None MIMAT0012549 chr7 90554689 90554748 - Vertebrata Bilateria No 1 1
Cfa-Mir-9-P2 cfa-mir-9-2 MIR-9 CUUUGGU MIMAT0006674 None chr3 19997697 19997755 + Vertebrata Bilateria No 1 1
Cli-Mir-9-P2 cli-mir-9-2 MIR-9 CUUUGGU MIMAT0038401 MIMAT0038402 scaffold114 234188 234246 - Vertebrata Bilateria No 1 1
Cpi-Mir-9-P2 cpi-mir-9-2 MIR-9 CUUUGGU MIMAT0037622 MIMAT0037623 JH584533 3129780 3129839 + Vertebrata Bilateria No 1 1
Cpo-Mir-9-P2 cpo-mir-9-2 MIR-9 CUUUGGU MIMAT0046843 MIMAT0046844 scaffold_1 16334937 16334995 + Vertebrata Bilateria No 1 1
Dno-Mir-9-P2 dno-mir-9-2 MIR-9 CUUUGGU MIMAT0047495 MIMAT0047496 JH570378 3465280 3465338 - Vertebrata Bilateria No 1 1
Ete-Mir-9-P2 None MIR-9 CUUUGGU None None JH980308 10835174 10835232 + Vertebrata Bilateria No 1 1
Gga-Mir-9-P2 gga-mir-9-2 MIR-9 CUUUGGU MIMAT0001195 None Z 60469257 60469315 + Vertebrata Bilateria No 1 1
Hsa-Mir-9-P2 hsa-mir-9-2 MIR-9 CUUUGGU MIMAT0000441 MIMAT0000442 chr5 88666866 88666924 - Vertebrata Bilateria No 1 1
Mdo-Mir-9-P2 mdo-mir-9a-2 MIR-9 CUUUGGU MIMAT0004087 MIMAT0004088 3 215711861 215711920 + Vertebrata Bilateria No 1
Mml-Mir-9-P2 mml-mir-9-2 MIR-9 CUUUGGU MIMAT0006160 MIMAT0026796 chr6 85611124 85611182 - Vertebrata Bilateria No 1 1
Mmu-Mir-9-P2 mmu-mir-9-2 MIR-9 CUUUGGU MIMAT0000142 MIMAT0000143 chr13 83738821 83738879 + Vertebrata Bilateria No 1 1
Oan-Mir-9-P2 oan-mir-9-2 MIR-9 CUUUGGU MIMAT0006792 None NC_041728.1 16000538 16000597 + Vertebrata Bilateria No 1
Ocu-Mir-9-P2 ocu-mir-9-2 MIR-9 CUUUGGU MIMAT0048095 MIMAT0048096 chr11 8577705 8577763 - Vertebrata Bilateria No 1 1
Rno-Mir-9-P2 rno-mir-9a-2 MIR-9 CUUUGGU MIMAT0000781 MIMAT0004708 chr2 11884686 11884744 + Vertebrata Bilateria No 1 1
Sha-Mir-9-P2 sha-mir-9 MIR-9 CUUUGGU MIMAT0022783 None GL841279.1 926547 926606 + Vertebrata Bilateria No 1
Sto-Mir-9-P2 None MIR-9 CUUUGGU None None BFAA01001536.1 489899 489959 - Vertebrata Bilateria No 1 1
Tgu-Mir-9-P2 tgu-mir-9-2 MIR-9 CUUUGGU MIMAT0014502 MIMAT0014627 Z 12103947 12104005 - Vertebrata Bilateria No 1 1
Xtr-Mir-9-P2 xtr-mir-9a-2 MIR-9 CUUUGGU MIMAT0003553 MIMAT0003554 KB021649 28713037 28713095 - Vertebrata Bilateria No 1 1
Dre-Mir-9-P2a dre-mir-9-2 MIR-9 CUUUGGU MIMAT0001769 MIMAT0003156 chr10 43535995 43536054 - D. rerio Bilateria No 1 1
Dre-Mir-9-P2b dre-mir-9-5 MIR-9 CUUUGGU MIMAT0001769 MIMAT0003156 chr5 48170110 48170169 - D. rerio Bilateria No 1
Aca-Mir-9-P3 aca-mir-9-2 MIR-9 CUUUGGU MIMAT0021990 None GL343444.1 370606 370667 + Vertebrata Bilateria No 1 1
Ami-Mir-9-P3 ami-mir-9-3 MIR-9 CUUUGGU MIMAT0038027 MIMAT0038028 JH733205 156451 156512 - Vertebrata Bilateria No 1 1
Bta-Mir-9-P3 bta-mir-9-1 MIR-9 CUUUGGU None MIMAT0012549 chr21 21250116 21250177 + Vertebrata Bilateria No 1 1
Cfa-Mir-9-P3 cfa-mir-9-3 MIR-9 CUUUGGU MIMAT0006674 None chr3 52410840 52410900 + Vertebrata Bilateria No 1 1
Cpi-Mir-9-P3 cpi-mir-9-3 MIR-9 CUUUGGU MIMAT0037622 MIMAT0037623 JH584649 9602582 9602643 + Vertebrata Bilateria No 1 1
Cpo-Mir-9-P3 cpo-mir-9-3 MIR-9 CUUUGGU MIMAT0046843 MIMAT0046844 scaffold_10 34662884 34662944 - Vertebrata Bilateria No 1 1
Dno-Mir-9-P3 dno-mir-9-3 MIR-9 CUUUGGU MIMAT0047495 MIMAT0047496 JH566228 425110 425170 - Vertebrata Bilateria No 1 1
Ete-Mir-9-P3 None MIR-9 CUUUGGU None None JH980334 17366920 17366980 + Vertebrata Bilateria No 1 1
Gga-Mir-9-P3 gga-mir-9-3 MIR-9 CUUUGGU MIMAT0001195 None 10 12934134 12934194 - Vertebrata Bilateria No 1 1
Hsa-Mir-9-P3 hsa-mir-9-3 MIR-9 CUUUGGU MIMAT0000441 MIMAT0000442 chr15 89368032 89368092 + Vertebrata Bilateria No 1 1
Mdo-Mir-9-P3 mdo-mir-9a-1 MIR-9 CUUUGGU MIMAT0004087 MIMAT0004088 1 122711584 122711644 - Vertebrata Bilateria No 1 1
Mml-Mir-9-P3 mml-mir-9-3 MIR-9 CUUUGGU MIMAT0006160 MIMAT0031078 chr7 67381836 67381896 + Vertebrata Bilateria No 1 1
Mmu-Mir-9-P3 mmu-mir-9-3 MIR-9 CUUUGGU MIMAT0000142 MIMAT0000143 chr7 79505279 79505339 + Vertebrata Bilateria No 1 1
Oan-Mir-9-P3 None MIR-9 CUUUGGU None None NC_041732.1 21919514 21919575 + Vertebrata Bilateria No 1 1
Ocu-Mir-9-P3 None MIR-9 CUUUGGU None None 1937863118 363 423 - Vertebrata Bilateria No 1 1
Rno-Mir-9-P3 rno-mir-9a-3 MIR-9 CUUUGGU MIMAT0000781 MIMAT0004708 chr1 141229368 141229428 + Vertebrata Bilateria No 1 1
Sha-Mir-9-P3 None MIR-9 CUUUGGU None None GL834472.1 1703520 1703581 - Vertebrata Bilateria No 1
Sto-Mir-9-P3 None MIR-9 CUUUGGU None None BFAA01002459.1 249955 250016 + Vertebrata Bilateria No 1
Tgu-Mir-9-P3 tgu-mir-9-1 MIR-9 CUUUGGU MIMAT0014502 MIMAT0014627 10 12969739 12969799 - Vertebrata Bilateria No 1 1
Xtr-Mir-9-P3 xtr-mir-9-3 MIR-9 CUUUGGU MIMAT0003649 MIMAT0003650 KB021651 25488359 25488419 + Vertebrata Bilateria No 1 1
Dre-Mir-9-P3a dre-mir-9-6 MIR-9 CUUUGGU MIMAT0001769 MIMAT0003156 chr7 14379556 14379617 - D. rerio Bilateria No 1 1
Dre-Mir-9-P3b dre-mir-9-3 MIR-9 CUUUGGU MIMAT0001769 MIMAT0003156 chr25 8551263 8551322 - D. rerio Bilateria No
Aca-Mir-9-P4 aca-mir-9-3 MIR-9 CUUUGGU MIMAT0021990 MIMAT0021992 G889P613971RN1 310 369 - Vertebrata Bilateria No 1
Ami-Mir-9-P4 ami-mir-9-4 MIR-9 CUUUGGU MIMAT0038027 MIMAT0038029 JH735857 281517 281576 + Vertebrata Bilateria No 1 1
Cli-Mir-9-P4 cli-mir-9-3 MIR-9 CUUUGGU MIMAT0038401 MIMAT0038403 scaffold194 244986 245046 + Vertebrata Bilateria No 1 1
Cpi-Mir-9-P4 cpi-mir-9-4 MIR-9 CUUUGGU MIMAT0037622 MIMAT0037624 JH584400 2327223 2327282 + Vertebrata Bilateria No 1 1
Gga-Mir-9-P4 gga-mir-9-1 MIR-9 CUUUGGU MIMAT0001195 MIMAT0003350 28 3623186 3623246 + Vertebrata Bilateria No 1 1
Oan-Mir-9-P4 oan-mir-9-1 MIR-9 CUUUGGU MIMAT0006792 MIMAT0006793 NC_041749.1 114595993 114596051 - Vertebrata Bilateria No 1 1
Sha-Mir-9-P4 None MIR-9 CUUUGGU None None GL841420.1 1045007 1045065 - Vertebrata Bilateria No 1
Sto-Mir-9-P4 None MIR-9 CUUUGGU None None BFAA01002607.1 288230 288290 + Vertebrata Bilateria No 1
Dre-Mir-9-P4a dre-mir-9-4 MIR-9 CUUUGGU MIMAT0001769 MIMAT0031932 chr22 18254783 18254842 + D. rerio Bilateria No 1 1
Dre-Mir-9-P4b dre-mir-9-7 MIR-9 CUUUGGU MIMAT0001769 MIMAT0031933 chr2 59102181 59102239 - D. rerio Bilateria No 1
Bfl-Mir-9-P5 bfl-mir-9-1 MIR-9 CUUUGGU MIMAT0009465 None Bf_V2_430 38056 38116 + B. floridae Bilateria Unknown 1 1
Bfl-Mir-9-P6 bfl-mir-9-2 MIR-9 CUUUGGU MIMAT0009465 None Bf_V2_195 400338 400398 + B. floridae Bilateria Unknown 1 1
Dan-Mir-9-P7 dan-mir-9a MIR-9 CUUUGGU MIMAT0008458 None scaffold_13337 17332447 17332507 - Diptera Bilateria No 1 1 1
Dme-Mir-9-P7 dme-mir-9a MIR-9 CUUUGGU MIMAT0000114 MIMAT0020792 chr3L 19565140 19565200 + Diptera Bilateria No 1 1
Dmo-Mir-9-P7 dmo-mir-9a MIR-9 CUUUGGU MIMAT0008670 None scaffold_6680 14226522 14226582 - Diptera Bilateria No 1 1
Aae-Mir-9-P7a aae-mir-9a-1 MIR-9 CUUUGGU MIMAT0014323 None supercont1.517 574919 574980 + A. aegypti Bilateria No 1 1
Aae-Mir-9-P7b aae-mir-9a-2 MIR-9 CUUUGGU MIMAT0014323 None supercont1.517 555117 555178 + A. aegypti Bilateria No 1 1
Aae-Mir-9-P8 aae-mir-9b MIR-9 CUUUGGU MIMAT0014324 None supercont1.785 213584 213649 + Diptera Bilateria No
Dan-Mir-9-P8 dan-mir-9b MIR-9 CUUUGGU MIMAT0008416 None scaffold_12916 15864555 15864614 - Diptera Bilateria No 1 1
Dme-Mir-9-P8 dme-mir-9b MIR-9 CUUUGGU MIMAT0000395 MIMAT0020829 chr2L 16698758 16698820 + Diptera Bilateria No 1 1
Dmo-Mir-9-P8 dmo-mir-9b MIR-9 CUUUGGU MIMAT0008666 None scaffold_6500 7202321 7202381 + Diptera Bilateria No 1 1
Aae-Mir-9-P9 aae-mir-9c MIR-9 CUUUGGU MIMAT0014212 MIMAT0014213 supercont1.785 186231 186302 + Diptera Bilateria No 1
Dan-Mir-9-P9 dan-mir-9c MIR-9 CUUUGGU MIMAT0008456 None scaffold_12916 15865484 15865553 - Diptera Bilateria No 1
Dme-Mir-9-P9 dme-mir-9c MIR-9 CUUUGGU MIMAT0000392 MIMAT0020828 chr2L 16697936 16698005 + Diptera Bilateria No
Dmo-Mir-9-P9 dmo-mir-9c MIR-9 CUUUGGU MIMAT0008683 None scaffold_6500 7201357 7201423 + Diptera Bilateria No 1
Cgi-Mir-9-P12 None MIR-9 CUUUGGU None None scaffold42448 83582 83643 - C. gigas Bilateria No 1
Cgi-Mir-9-P13 None MIR-9 CUUUGGU None None scaffold42448 84463 84524 - C. gigas Bilateria No 1
Cgi-Mir-9-P14 None MIR-9 CUUUGGU None None scaffold42448 85409 85470 - C. gigas Bilateria No 1
Efe-Mir-9-P15 None MIR-9 CUUUGGU None None Efet.01.650086 1540 1600 + E. fetida Bilateria No 1
Efe-Mir-9-P16 None MIR-9 CUUUGGU None None Efet.01.1380669 63 123 - E. fetida Bilateria Unknown 1
Cbr-Mir-9-P19 cbr-mir-244 MIR-9 CUUUGGU MIMAT0000502 None I 3161588 3161646 + Caenorhabditis Bilateria No
Cel-Mir-9-P19 cel-mir-244 MIR-9 CUUUGGU MIMAT0000300 MIMAT0015118 chrI 4684336 4684399 - Caenorhabditis Bilateria No

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