MirGeneDB 2.1
MirGeneDB ID

Loc-Mir-9-P1

Family name MIR-9 (all species)
Seed CUUUGGU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-9-P2  Loc-Mir-9-P3 
Orthologues Aca-Mir-9-P1  Ami-Mir-9-P1  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P1  Cfa-Mir-9-P1  Cin-Mir-9  Cmi-Mir-9-P1  Cpi-Mir-9-P1  Cpo-Mir-9-P1  Cte-Mir-9  Dno-Mir-9-P1  Dre-Mir-9-P1a  Dre-Mir-9-P1b  Esc-Mir-9  Ete-Mir-9-P1  Gga-Mir-9-P1  Gja-Mir-9-P1  Gmo-Mir-9-P1a  Gmo-Mir-9-P1b  Hme-Mir-9-o1  Hsa-Mir-9-P1  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P1  Lgi-Mir-9  Mal-Mir-9-P1a  Mal-Mir-9-P1b  Mdo-Mir-9-P1  Mml-Mir-9-P1  Mmu-Mir-9-P1  Mun-Mir-9-P1  Npo-Mir-9  Oan-Mir-9-P1  Obi-Mir-9  Ocu-Mir-9-P1  Ovu-Mir-9  Pbv-Mir-9-P1  Pma-Mir-9-o1  Pmi-Mir-9  Rno-Mir-9-P1  Sha-Mir-9-P1  Spt-Mir-9-P1  Spu-Mir-9  Sto-Mir-9-P1  Tgu-Mir-9-P1  Tni-Mir-9-P1a  Tni-Mir-9-P1b  Xbo-Mir-9  Xla-Mir-9-P1c  Xla-Mir-9-P1d  Xtr-Mir-9-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)		 LG3: 56190417-56190478 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACGCCCGGACGGAGAGGGAGUCGGUUGCUAUCUUUGGUUAUCUAGCUGUAUGAGUGUUAUUCAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGACUUCCAAACCUGCGCGCCACCCU
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Structure
        10           20        30        40        50        60
ACGCCCGGACGGAGAGG---|     GUUG   UC               G     GUGUUA 
                    GAGUCG    CUA  UUUGGUUAUCUAGCU UAUGA      U
                    UUCAGU    GAU  AAGCCAAUAGAUCGA AUACU      U
UCCCACCGCGCGUCCAAACC^     AAA-   GA               A     GCCGAC 
120       110       100         90        80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-9-P1_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Loc-Mir-9-P1_3p*
mirBase accessionNone
Sequence 
39- AUAAAGCUAGAUAACCGAAAGUA -62
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