MirGeneDB

MirGeneDB ID

Cpi-Mir-9-P1

Family name MIR-9 (all species)
Seed CUUUGGU
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-9-1
Paralogues Cpi-Mir-9-P2  Cpi-Mir-9-P3  Cpi-Mir-9-P4 
Orthologues Ami-Mir-9-P1  Bta-Mir-9-P1  Cfa-Mir-9-P1  Cin-Mir-9  Cli-Mir-9-P1  Cpo-Mir-9-P1  Cte-Mir-9  Dno-Mir-9-P1  Dre-Mir-9-P1  Ete-Mir-9-P1  Gga-Mir-9-P1  Hsa-Mir-9-P1  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Mdo-Mir-9-P1  Mml-Mir-9-P1  Mmu-Mir-9-P1  Oan-Mir-9-P1-v1  Oan-Mir-9-P1-v2  Ocu-Mir-9-P1  Pmi-Mir-9  Rno-Mir-9-P1  Sha-Mir-9-P1  Spu-Mir-9  Xtr-Mir-9-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(chrPic1)
JH584965: 536050-536111 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GAUGCUGUAGACUUCAGGGGUUGGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGGUGUCAAUUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAAUAACCCCAUUACACGCCUGAGGAGGA
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Structure
        10           20        30        40        50        60
GAUGCUGUAGACUUCAG---|     GUUG   UC               G     GUGGUG 
                    GGGUUG    UUA  UUUGGUUAUCUAGCU UAUGA      U
                    CCCAAU    AAU  AAGCCAAUAGAUCGA AUACU      C
AGGAGGAGUCCGCACAUUAC^     AAA-   GA               A     UCUUAA 
120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Te Te Te To
Mature sequence

Cpi-Mir-9-P1_5p

MirBase accessionMIMAT0037622
Sequence
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Cpi-Mir-9-P1_3p*

MirBase accessionMIMAT0037623
Sequence
39- AUAAAGCUAGAUAACCGAAAGUA -62
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