MirGeneDB ID | Cpi-Mir-9-P2 |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Western painted turtle (Chrysemys picta bellii) |
MiRBase ID |
cpi-mir-9-2
|
Paralogues |
Cpi-Mir-9-P1
Cpi-Mir-9-P3
Cpi-Mir-9-P4
|
Orthologues |
Aca-Mir-9-P2
Ami-Mir-9-P2
Bta-Mir-9-P2
Cfa-Mir-9-P2
Cin-Mir-9
Cli-Mir-9-P2
Cpo-Mir-9-P2
Cte-Mir-9
Dno-Mir-9-P2
Dre-Mir-9-P2a
Dre-Mir-9-P2b
Ete-Mir-9-P2
Gga-Mir-9-P2
Hsa-Mir-9-P2
Isc-Mir-9
Lan-Mir-9
Lgi-Mir-9
Mdo-Mir-9-P2
Mml-Mir-9-P2
Mmu-Mir-9-P2
Oan-Mir-9-P2
Ocu-Mir-9-P2
Pmi-Mir-9
Rno-Mir-9-P2
Sha-Mir-9-P2
Spu-Mir-9
Sto-Mir-9-P2
Tgu-Mir-9-P2
Xtr-Mir-9-P2
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Bilateria
|
Genome context (chrPic1) |
JH584533: 3129780-3129839 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
AUAAAAAUUCUGUGAGGAAGCGAGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGUGUUGGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUCCUUCAUGAUCAUCGUGAAGCCUG
Get precursor sequence
|
Structure | 10 20 30 40 50
AUAAAAAUUCUGUGAGG---| C G UC G GUGUG
AAG GAGUU UUA UUUGGUUAUCUAGCU UAUGA U
UUC CUCAA AAU AAGCCAAUAGAUCGA AUACU U
GUCCGAAGUGCUACUAGUAC^ - A GA A UCUGG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Cpi-Mir-9-P2_5p |
MirBase accession | MIMAT0037622 |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Star sequence |
Cpi-Mir-9-P2_3p* |
MirBase accession | MIMAT0037623 |
Sequence |
37- AUAAAGCUAGAUAACCGAAAGUA -60
Get sequence
|