MirGeneDB 2.1

MirGeneDB ID

Pbv-Mir-9-P2

Family name MIR-9 (all species)
Seed CUUUGGU
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-9-2
Paralogues Pbv-Mir-9-P1  Pbv-Mir-9-P3  Pbv-Mir-9-P4 
Orthologues Aca-Mir-9-P2  Ami-Mir-9-P2  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P2  Cfa-Mir-9-P2  Cin-Mir-9  Cli-Mir-9-P2  Cmi-Mir-9-P2  Cpi-Mir-9-P2  Cpo-Mir-9-P2  Cte-Mir-9  Dno-Mir-9-P2  Dre-Mir-9-P2a  Dre-Mir-9-P2b  Esc-Mir-9  Ete-Mir-9-P2  Gga-Mir-9-P2  Gja-Mir-9-P2  Gmo-Mir-9-P2b  Hme-Mir-9-o2  Hsa-Mir-9-P2  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P2  Lgi-Mir-9  Loc-Mir-9-P2  Mal-Mir-9-P2b  Mdo-Mir-9-P2  Mml-Mir-9-P2  Mmu-Mir-9-P2  Mun-Mir-9-P2  Npo-Mir-9  Oan-Mir-9-P2  Obi-Mir-9  Ocu-Mir-9-P2  Ovu-Mir-9  Pma-Mir-9-o2  Pmi-Mir-9  Rno-Mir-9-P2  Sha-Mir-9-P2  Spt-Mir-9-P2  Spu-Mir-9  Sto-Mir-9-P2  Tgu-Mir-9-P2  Tni-Mir-9-P2b  Xbo-Mir-9  Xla-Mir-9-P2c  Xla-Mir-9-P2d  Xtr-Mir-9-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE953277.1: 11651-11710 [+]
Precursor
(pre-Mir +30nt flank)
CUGCAGACUAUAUGAGGAAGCGAGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGUGUUGGCCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUCCUUCAUGAUCUUCGUGCUGCUCA
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Structure
        10           20        30        40        50         
CUGCAGACUAUAUGAGG---|  C     G   UC               G     GUGUG 
                    AAG GAGUU UUA  UUUGGUUAUCUAGCU UAUGA     U
                    UUC CUCAA AAU  AAGCCAAUAGAUCGA AUACU     U
ACUCGUCGUGCUUCUAGUAC^  -     A   GA               A     UCCGG 
.       110       100         90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Mature sequence

Pbv-Mir-9-P2_5p

mirBase accessionMIMAT0038821
Sequence
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Pbv-Mir-9-P2_3p*

mirBase accessionMIMAT0038822
Sequence
37- AUAAAGCUAGAUAACCGAAAGUA -60
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