Mir-9-P2

MirGeneDB ID

Rno-Mir-9-P2

Family name

MIR-9 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-9a-2

Paralogues

Rno-Mir-9-P1 Rno-Mir-9-P3

Orthologues

Aca-Mir-9-P2 Agr-Mir-9 Ami-Mir-9-P2 Bfl-Mir-9 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Bta-Mir-9-P2 Cfa-Mir-9-P2 Cin-Mir-9 Cja-Mir-9-P2 Cli-Mir-9-P2 Cmi-Mir-9-P2 Cpi-Mir-9-P2 Cpo-Mir-9-P2 Cte-Mir-9 Dgr-Mir-9 Dno-Mir-9-P2 Dre-Mir-9-P2a Dre-Mir-9-P2b Eba-Mir-9 Eca-Mir-9-P2 Egr-Mir-9 Esc-Mir-9 Ete-Mir-9-P2 Gga-Mir-9-P2 Gja-Mir-9-P2 Gmo-Mir-9-P2b Gsa-Mir-9 Gsp-Mir-9 Hmi-Mir-9 Hru-Mir-9 Hsa-Mir-9-P2 Isc-Mir-9 Laf-Mir-9-P2 Lan-Mir-9 Lch-Mir-9-P2 Lgi-Mir-9 Llo-Mir-9 Loc-Mir-9-P2 Mal-Mir-9-P2b Mdo-Mir-9-P2 Mml-Mir-9-P2 Mmr-Mir-9-P2 Mmu-Mir-9-P2 Mom-Mir-9 Mun-Mir-9-P2 Neu-Mir-9-P2 Npo-Mir-9 Oan-Mir-9-P2 Obi-Mir-9 Ocu-Mir-9-P2 Ofu-Mir-9 Ovu-Mir-9 Pab-Mir-9-P2 Pau-Mir-9 Pbv-Mir-9-P2 Pdu-Mir-9 Pma-Mir-9-o2 Pmi-Mir-9 Pve-Mir-9 Rph-Mir-9 Sha-Mir-9-P2 Sma-Mir-9 Snu-Mir-9 Spt-Mir-9-P2 Spu-Mir-9 Sto-Mir-9-P2 Tgu-Mir-9-P2 Tni-Mir-9-P2b War-Mir-9 Xbo-Mir-9 Xla-Mir-9-P2c Xla-Mir-9-P2d Xtr-Mir-9-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr2: 11884686-11884745 [+] UCSC Ensembl

Seed

CUUUGGU

Precursor
(pre-Mir +30nt flank)

AGACAGCCUUGUGAGGGAAGCGAGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGUAUUGGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUCCUUCAAGAUCACCGAGGAGUGCU

Get precursor sequence

Structure

        10           20        30        40        50         
AGACAGCCUUGUGAGGG---|  C     G   UC               G     GUGUA 
                    AAG GAGUU UUA  UUUGGUUAUCUAGCU UAUGA     U
                    UUC CUCAA AAU  AAGCCAAUAGAUCGA AUACU     U
UCGUGAGGAGCCACUAGAAC^  -     A   GA               A     UCUGG 
.       110       100         90        80        70        60

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-9-P2_5p

mirBase accession

MIMAT0000781

Sequence

0- UCUUUGGUUAUCUAGCUGUAUGA -23

Get sequence

Proposed targets

microrna.org: MIMAT0000781
TargetScanVert: rno-miR-9a-5p
miRDB: MIMAT0000781

Star sequence

Rno-Mir-9-P2_3p*

mirBase accession

MIMAT0004708

Sequence

37- AUAAAGCUAGAUAACCGAAAGUA -60

Get sequence

Proposed targets

microrna.org: MIMAT0004708
TargetScanVert: rno-miR-9a-3p
miRDB: MIMAT0004708