MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-9-P2c

Family name MIR-9 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-9-P1c  Xla-Mir-9-P1d  Xla-Mir-9-P2d  Xla-Mir-9-P3c  Xla-Mir-9-P3d  Xla-Mir-9-P4c  Xla-Mir-9-P4d 
Orthologues Aca-Mir-9-P2  Agr-Mir-9  Ami-Mir-9-P2  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P2  Cfa-Mir-9-P2  Cin-Mir-9  Cja-Mir-9-P2  Cli-Mir-9-P2  Cmi-Mir-9-P2  Cpi-Mir-9-P2  Cpo-Mir-9-P2  Cte-Mir-9  Dgr-Mir-9  Dno-Mir-9-P2  Eba-Mir-9  Eca-Mir-9-P2  Egr-Mir-9  Esc-Mir-9  Ete-Mir-9-P2  Gga-Mir-9-P2  Gja-Mir-9-P2  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Hsa-Mir-9-P2  Isc-Mir-9  Laf-Mir-9-P2  Lan-Mir-9  Lch-Mir-9-P2  Lgi-Mir-9  Llo-Mir-9  Loc-Mir-9-P2  Mdo-Mir-9-P2  Mml-Mir-9-P2  Mmr-Mir-9-P2  Mmu-Mir-9-P2  Mom-Mir-9  Mun-Mir-9-P2  Neu-Mir-9-P2  Npo-Mir-9  Oan-Mir-9-P2  Obi-Mir-9  Ocu-Mir-9-P2  Ofu-Mir-9  Ovu-Mir-9  Pab-Mir-9-P2  Pau-Mir-9  Pbv-Mir-9-P2  Pdu-Mir-9  Pma-Mir-9-o2  Pmi-Mir-9  Pve-Mir-9  Rno-Mir-9-P2  Rph-Mir-9  Sha-Mir-9-P2  Sma-Mir-9  Snu-Mir-9  Spt-Mir-9-P2  Spu-Mir-9  Sto-Mir-9-P2  Tgu-Mir-9-P2  War-Mir-9  Xbo-Mir-9  Xtr-Mir-9-P2 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030724.1: 182078649-182078707 [+] UCSC Ensembl
Seed CUUUGGU
Precursor
(pre-Mir +30nt flank)		 
AGGAUCAGUGUGUGUGGGAAGUGGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUUUAUUGGUUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUCCUUCCAGAUCUUCACAUCGCACA
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Structure
        10          20        30        40        50         
AGGAUCAGUGUGUGUGG--|   UG   G   UC               G     GUUUA 
                   GAAG  GUU UUA  UUUGGUUAUCUAGCU UAUGA     \
                   CUUC  CAA AAU  AAGCCAAUAGAUCGA AUACU     U
ACACGCUACACUUCUAGAC^   CU   A   GA               A     UUGGU 
       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-9-P2c_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Co-mature sequence

Xla-Mir-9-P2c_3p
mirBase accessionNone
Sequence 
36- AUAAAGCUAGAUAACCGAAAGUA -59
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