MirGeneDB

MirGeneDB ID

Gga-Mir-9-P2

Family name MIR-9 (all species)
Seed CUUUGGU
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-9-2
Paralogues Gga-Mir-9-P1  Gga-Mir-9-P3  Gga-Mir-9-P4 
Orthologues Aca-Mir-9-P2  Ami-Mir-9-P2  Bta-Mir-9-P2  Cfa-Mir-9-P2  Cin-Mir-9  Cli-Mir-9-P2  Cpi-Mir-9-P2  Cpo-Mir-9-P2  Cte-Mir-9  Dno-Mir-9-P2  Dre-Mir-9-P2a  Dre-Mir-9-P2b  Ete-Mir-9-P2  Hsa-Mir-9-P2  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Mdo-Mir-9-P2  Mml-Mir-9-P2  Mmu-Mir-9-P2  Oan-Mir-9-P2  Ocu-Mir-9-P2  Pmi-Mir-9  Rno-Mir-9-P2  Sha-Mir-9-P2  Spu-Mir-9  Sto-Mir-9-P2  Tgu-Mir-9-P2  Xtr-Mir-9-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(galGal5)
Z: 60469257-60469315 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAAUAAAGCUUUGAGGGAAGCGAGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGUUUUGGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUCCUUCAAGAUCAUCGUACAGCGU
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Structure
        10          20        30        40        50         
UAAUAAAGCUUUGAGGG--|  C     G   UC               G     GUGUU 
                   AAG GAGUU UUA  UUUGGUUAUCUAGCU UAUGA     U
                   UUC CUCAA AAU  AAGCCAAUAGAUCGA AUACU     U
UGCGACAUGCUACUAGAAC^  -     A   GA               A     UCUGG 
       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-9-P2_5p

MirBase accessionMIMAT0001195
Sequence
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Gga-Mir-9-P2_3p*

MirBase accessionNone
Sequence
37- AUAAAGCUAGAUAACCGAAAGU -59
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