MirGeneDB

MirGeneDB ID

Mdo-Mir-9-P2

Family name MIR-9 (all species)
Seed CUUUGGU
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-9a-2
Paralogues Mdo-Mir-9-P1  Mdo-Mir-9-P3  Mdo-Mir-9-P4 
Orthologues Aca-Mir-9-P2  Ami-Mir-9-P2  Bta-Mir-9-P2  Cfa-Mir-9-P2  Cin-Mir-9  Cli-Mir-9-P2  Cpi-Mir-9-P2  Cpo-Mir-9-P2  Cte-Mir-9  Dno-Mir-9-P2  Dre-Mir-9-P2a  Dre-Mir-9-P2b  Ete-Mir-9-P2  Gga-Mir-9-P2  Hsa-Mir-9-P2  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Mml-Mir-9-P2  Mmu-Mir-9-P2  Oan-Mir-9-P2  Ocu-Mir-9-P2  Pmi-Mir-9  Rno-Mir-9-P2  Sha-Mir-9-P2  Spu-Mir-9  Sto-Mir-9-P2  Tgu-Mir-9-P2  Xtr-Mir-9-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(monDom5)
3: 215711861-215711920 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCAAGUCCUGUGAGGGAAGUGAGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGUAUUGGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUCCUUCAAGAUCUUCGAGGAGCGUG
Get precursor sequence
Structure
        10           20        30        40        50         
GCCAAGUCCUGUGAGGG---|  U     G   UC               G    AGUGUA 
                    AAG GAGUU UUA  UUUGGUUAUCUAGCU UAUG      U
                    UUC CUCAA AAU  AAGCCAAUAGAUCGA AUAC      U
GUGCGAGGAGCUUCUAGAAC^  -     A   GA               A    UUCUGG 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-9-P2_5p

MirBase accessionMIMAT0004087
Sequence
0- UCUUUGGUUAUCUAGCUGUAUG -22
Get sequence
Validated targets TargetScanVert: mdo-miR-9a-5p
Star sequence

Mdo-Mir-9-P2_3p*

MirBase accessionMIMAT0004088
Sequence
38- UAAAGCUAGAUAACCGAAAGUA -60
Get sequence
Validated targets TargetScanVert: mdo-miR-9a-3p