MirGeneDB

MirGeneDB ID

Mdo-Mir-9-P3

Family name MIR-9 (all species)
Seed CUUUGGU
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-9a-1
Paralogues Mdo-Mir-9-P1  Mdo-Mir-9-P2  Mdo-Mir-9-P4 
Orthologues Aca-Mir-9-P3  Ami-Mir-9-P3  Bta-Mir-9-P3  Cfa-Mir-9-P3  Cin-Mir-9  Cpi-Mir-9-P3  Cpo-Mir-9-P3  Cte-Mir-9  Dno-Mir-9-P3  Dre-Mir-9-P3a  Dre-Mir-9-P3b  Ete-Mir-9-P3  Gga-Mir-9-P3  Hsa-Mir-9-P3  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Mml-Mir-9-P3  Mmu-Mir-9-P3  Oan-Mir-9-P3  Ocu-Mir-9-P3  Pmi-Mir-9  Rno-Mir-9-P3  Sha-Mir-9-P3  Spu-Mir-9  Sto-Mir-9-P3  Tgu-Mir-9-P3  Xtr-Mir-9-P3 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(monDom5)
1: 122711584-122711644 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGGGCCUGCGGGAUCGAGGCCCGUUUCUCUCUUUGGUUAUCUAGCUGUAUGAGUGUUAUUGAGCUAUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGACUUUCACAACUUCUCCGAGCUG
Get precursor sequence
Structure
        10        20          30        40        50        60
GGGGGCCUGCGGGAUCGAGGCC-       -| C               G     GUGUUA 
                       CGUUUCU CU UUUGGUUAUCUAGCU UAUGA      U
                       GUAAAGA GA AAGCCAAUAGAUCGA AUACU      U
GUCGAGCCUCUUCAACACUUUCA       U^ -               A     AUCGAG 
 .       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-9-P3_5p

MirBase accessionMIMAT0004087
Sequence
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
Validated targets TargetScanVert: mdo-miR-9a-5p
Star sequence

Mdo-Mir-9-P3_3p*

MirBase accessionMIMAT0004088
Sequence
39- AUAAAGCUAGAUAACCGAAAGU -61
Get sequence
Validated targets TargetScanVert: mdo-miR-9a-3p