MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-9-P3b

Family name MIR-9 (all species)
Seed CUUUGGU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-9-1
Paralogues Gmo-Mir-9-P1a  Gmo-Mir-9-P1b  Gmo-Mir-9-P2b  Gmo-Mir-9-P3a  Gmo-Mir-9-P4a  Gmo-Mir-9-P4b 
Orthologues Ami-Mir-9-P3  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P3  Cfa-Mir-9-P3  Cin-Mir-9  Cli-Mir-9-P3  Cpi-Mir-9-P3  Cpo-Mir-9-P3  Cte-Mir-9  Dno-Mir-9-P3  Esc-Mir-9  Ete-Mir-9-P3  Gga-Mir-9-P3  Gja-Mir-9-P3  Hme-Mir-9-o3  Hsa-Mir-9-P3  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P3  Lgi-Mir-9  Loc-Mir-9-P3  Mal-Mir-9-P3b  Mdo-Mir-9-P3  Mml-Mir-9-P3  Mmu-Mir-9-P3  Mun-Mir-9-P3  Npo-Mir-9  Oan-Mir-9-P3-v1  Oan-Mir-9-P3-v2  Obi-Mir-9  Ocu-Mir-9-P3  Ovu-Mir-9  Pbv-Mir-9-P3  Pma-Mir-9-o3  Pmi-Mir-9  Rno-Mir-9-P3  Sha-Mir-9-P3  Spt-Mir-9-P3  Spu-Mir-9  Tgu-Mir-9-P3  Tni-Mir-9-P3b  Xbo-Mir-9  Xtr-Mir-9-P3 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
contig74416: 161-222 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUGACCAAGGCCUGAGGGGUUGUCUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGGCAUACAUUCUUCAUAAAGCUAGAUAACCGAAAGUAACAAGAAUCCCAUUACACGCUCGUCAGGCC
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Structure
        10          20         30        40        50        60
CGUGACCAAGGCCUGAG--|  UUG   -    UC               G     GUGGCA 
                   GGG   UCU GUUA  UUUGGUUAUCUAGCU UAUGA      U
                   CCC   AGA CAAU  AAGCCAAUAGAUCGA AUACU      A
CCGGACUGCUCGCACAUUA^  UA-   A    GA               A     UCUUAC 
120       110       100         90        80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on the 3p arm.
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-9-P3b_5p

mirBase accessionMIMAT0044076
Sequence
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Gmo-Mir-9-P3b_3p*

mirBase accessionMIMAT0044077
Sequence
39- AUAAAGCUAGAUAACCGAAAGUA -62
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