MirGeneDB ID | Gmo-Mir-9-P2b |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Cod (Gadus morhua) |
MiRBase ID |
gmo-mir-9-4
|
Paralogues |
Gmo-Mir-9-P1a
Gmo-Mir-9-P1b
Gmo-Mir-9-P3a
Gmo-Mir-9-P3b
Gmo-Mir-9-P4a
Gmo-Mir-9-P4b
|
Orthologues |
Aca-Mir-9-P2
Ami-Mir-9-P2
Bfl-Mir-9
Bla-Mir-9
Bpl-Mir-9
Bta-Mir-9-P2
Cfa-Mir-9-P2
Cin-Mir-9
Cli-Mir-9-P2
Cmi-Mir-9-P2
Cpi-Mir-9-P2
Cpo-Mir-9-P2
Cte-Mir-9
Dno-Mir-9-P2
Dre-Mir-9-P2b
Esc-Mir-9
Ete-Mir-9-P2
Gga-Mir-9-P2
Gja-Mir-9-P2
Hme-Mir-9-o2
Hsa-Mir-9-P2
Isc-Mir-9
Lan-Mir-9
Lch-Mir-9-P2
Lgi-Mir-9
Loc-Mir-9-P2
Mal-Mir-9-P2b
Mdo-Mir-9-P2
Mml-Mir-9-P2
Mmu-Mir-9-P2
Mun-Mir-9-P2
Npo-Mir-9
Oan-Mir-9-P2
Obi-Mir-9
Ocu-Mir-9-P2
Ovu-Mir-9
Pbv-Mir-9-P2
Pma-Mir-9-o2
Pmi-Mir-9
Rno-Mir-9-P2
Sha-Mir-9-P2
Spt-Mir-9-P2
Spu-Mir-9
Sto-Mir-9-P2
Tgu-Mir-9-P2
Tni-Mir-9-P2b
Xbo-Mir-9
Xtr-Mir-9-P2
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_1980: 219082-219141 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCUUGUUGAAGAAUAGGAAGUGGGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGUUCUGCUCGUCAUAAAGCUAGAUAACCGAAAGUAAAAACUACUUUCAGACUCGUCGCCAACUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
CCUUGUUGAAGAAUAGG---| GUUG UC G GUGUU
AAGUGG UUA UUUGGUUAUCUAGCU UAUGA C
UUCAUC AAU AAGCCAAUAGAUCGA AUACU U
UUUCAACCGCUGCUCAGACU^ AAA- GA A GCUCG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on the 3p arm. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Gmo-Mir-9-P2b_5p |
mirBase accession | MIMAT0044076 |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Star sequence |
Gmo-Mir-9-P2b_3p* |
mirBase accession | None |
Sequence |
37- AUAAAGCUAGAUAACCGAAAGUA -60
Get sequence
|