MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-9-P2b

Family name MIR-9 (all species)
Seed CUUUGGU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-9-4
Paralogues Gmo-Mir-9-P1a  Gmo-Mir-9-P1b  Gmo-Mir-9-P3a  Gmo-Mir-9-P3b  Gmo-Mir-9-P4a  Gmo-Mir-9-P4b 
Orthologues Aca-Mir-9-P2  Ami-Mir-9-P2  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P2  Cfa-Mir-9-P2  Cin-Mir-9  Cli-Mir-9-P2  Cmi-Mir-9-P2  Cpi-Mir-9-P2  Cpo-Mir-9-P2  Cte-Mir-9  Dno-Mir-9-P2  Dre-Mir-9-P2b  Esc-Mir-9  Ete-Mir-9-P2  Gga-Mir-9-P2  Gja-Mir-9-P2  Hme-Mir-9-o2  Hsa-Mir-9-P2  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P2  Lgi-Mir-9  Loc-Mir-9-P2  Mal-Mir-9-P2b  Mdo-Mir-9-P2  Mml-Mir-9-P2  Mmu-Mir-9-P2  Mun-Mir-9-P2  Npo-Mir-9  Oan-Mir-9-P2  Obi-Mir-9  Ocu-Mir-9-P2  Ovu-Mir-9  Pbv-Mir-9-P2  Pma-Mir-9-o2  Pmi-Mir-9  Rno-Mir-9-P2  Sha-Mir-9-P2  Spt-Mir-9-P2  Spu-Mir-9  Sto-Mir-9-P2  Tgu-Mir-9-P2  Tni-Mir-9-P2b  Xbo-Mir-9  Xtr-Mir-9-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_1980: 219082-219141 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUUGUUGAAGAAUAGGAAGUGGGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGUUCUGCUCGUCAUAAAGCUAGAUAACCGAAAGUAAAAACUACUUUCAGACUCGUCGCCAACUUU
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Structure
        10           20        30        40        50         
CCUUGUUGAAGAAUAGG---|     GUUG   UC               G     GUGUU 
                    AAGUGG    UUA  UUUGGUUAUCUAGCU UAUGA     C
                    UUCAUC    AAU  AAGCCAAUAGAUCGA AUACU     U
UUUCAACCGCUGCUCAGACU^     AAA-   GA               A     GCUCG 
.       110       100         90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on the 3p arm.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-9-P2b_5p

mirBase accessionMIMAT0044076
Sequence
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Gmo-Mir-9-P2b_3p*

mirBase accessionNone
Sequence
37- AUAAAGCUAGAUAACCGAAAGUA -60
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