MirGeneDB ID | Gmo-Mir-9-P1a |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Cod (Gadus morhua) |
MiRBase ID |
gmo-mir-9-7
|
Paralogues |
Gmo-Mir-9-P1b
Gmo-Mir-9-P2b
Gmo-Mir-9-P3a
Gmo-Mir-9-P3b
Gmo-Mir-9-P4a
Gmo-Mir-9-P4b
|
Orthologues |
Aca-Mir-9-P1
Ami-Mir-9-P1
Bfl-Mir-9
Bla-Mir-9
Bpl-Mir-9
Bta-Mir-9-P1
Cfa-Mir-9-P1
Cin-Mir-9
Cmi-Mir-9-P1
Cpi-Mir-9-P1
Cpo-Mir-9-P1
Cte-Mir-9
Dno-Mir-9-P1
Dre-Mir-9-P1a
Esc-Mir-9
Ete-Mir-9-P1
Gga-Mir-9-P1
Gja-Mir-9-P1
Hme-Mir-9-o1
Hsa-Mir-9-P1
Isc-Mir-9
Lan-Mir-9
Lch-Mir-9-P1
Lgi-Mir-9
Loc-Mir-9-P1
Mal-Mir-9-P1a
Mdo-Mir-9-P1
Mml-Mir-9-P1
Mmu-Mir-9-P1
Mun-Mir-9-P1
Npo-Mir-9
Oan-Mir-9-P1
Obi-Mir-9
Ocu-Mir-9-P1
Ovu-Mir-9
Pbv-Mir-9-P1
Pma-Mir-9-o1
Pmi-Mir-9
Rno-Mir-9-P1
Sha-Mir-9-P1
Spt-Mir-9-P1
Spu-Mir-9
Sto-Mir-9-P1
Tgu-Mir-9-P1
Tni-Mir-9-P1a
Xbo-Mir-9
Xtr-Mir-9-P1
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_2213: 52396-52457 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUCCCUCGCAGGACAGGAGGUCUGUUUCUGUCUUUGGUUAUCUAGCUGUAUGAGUUUUAAAUCCCUGUCAUAAAGCUAGAUAACCGAAAGUAGAAAUGACUUCCAUUACUGACGUCUACAGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUCCCUCGCAGGACAGG---| U UC G GUUUUA
AGGUC GUUUCUG UUUGGUUAUCUAGCU UAUGA A
UUCAG UAAAGAU AAGCCAAUAGAUCGA AUACU A
AGACAUCUGCAGUCAUUACC^ - GA A GUCCCU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on the 3p arm. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Gmo-Mir-9-P1a_5p |
mirBase accession | MIMAT0044076 |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Star sequence |
Gmo-Mir-9-P1a_3p* |
mirBase accession | MIMAT0044077 |
Sequence |
39- AUAAAGCUAGAUAACCGAAAGUA -62
Get sequence
|