MirGeneDB

MirGeneDB ID

Sha-Mir-9-P1

Family name MIR-9 (all species)
Seed CUUUGGU
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-9-P2  Sha-Mir-9-P3  Sha-Mir-9-P4 
Orthologues Ami-Mir-9-P1  Bta-Mir-9-P1  Cfa-Mir-9-P1  Cin-Mir-9  Cli-Mir-9-P1  Cpi-Mir-9-P1  Cpo-Mir-9-P1  Cte-Mir-9  Dno-Mir-9-P1  Dre-Mir-9-P1  Ete-Mir-9-P1  Gga-Mir-9-P1  Hsa-Mir-9-P1  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Mdo-Mir-9-P1  Mml-Mir-9-P1  Mmu-Mir-9-P1  Oan-Mir-9-P1-v1  Oan-Mir-9-P1-v2  Ocu-Mir-9-P1  Pmi-Mir-9  Rno-Mir-9-P1  Spu-Mir-9  Xtr-Mir-9-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(DEVIL7_traces)
GL856822.1: 1577136-1577197 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUGCAGCAGGGAGGCGGGGUUGAUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGGUGUCGAGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAAUAACCCCAUACACUGCGGAGCACGAG
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Structure
        10           20        30        40        50        60
GCUGCAGCAGGGAGGCG---|     AUUG   UC               G    AGUGGUG 
                    GGGUUG    UUA  UUUGGUUAUCUAGCU UAUG       U
                    CCCAAU    AAU  AAGCCAAUAGAUCGA AUAC       C
GAGCACGAGGCGUCACAUAC^     AAA-   GA               A    UUCUGAG 
120       110       100         90        80        70
Deep sequencing
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CommentThere is a second Dicer cut +1 relative to what is annotated here.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-9-P1_5p

MirBase accessionNone
Sequence
0- UCUUUGGUUAUCUAGCUGUAUG -22
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Star sequence

Sha-Mir-9-P1_3p*

MirBase accessionNone
Sequence
40- UAAAGCUAGAUAACCGAAAGUA -62
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